Non-Coding RNA Search

Ss1.1-rfhi4040b_p20.5

Sequence:


               
               ATCAGCACTTTGTACTTATTAATTTCCTCCTCCTGCAACCTAGCAACAAGTAGAGATAGA
ACCTGCCTCTGTCAGAAGAAGAAACTGAGGCTCGGAGAAGCAAGGGTCTCCCGCTTGGCA
AATGGACTCTAATTTGAGGTTTAGAGTGCTGTCAGACACATCTGTTCCCGTGCAATCCCA
GATATTCGCCTCACCCTGCAGGATTTCTAACAGACATTCCCTGTGTCTGGAATGGAACTG
GGGAAAGTATACATTTCTCAACATCCCTCCCCCGCGGTGATTCTGATGTAGGTGGTACAA
TAGCCACACTCAGATATATATTTCACAGTCCATCACTGTAATGAAATTCGGCTTCAACTG
CCACAAATAAAGATAACCTCTTTTTTTTTTGTTGTTTTCATTCTGAAGATCAATAATATA
TGTTTAGGAAACTTGCTGGGCTGGAGGCTGCCTACTGAGAAACTCAGAACATTCCGTGAA
TGGGTCATACTAAGACCTGAACTTGAAGGGCACGGGGCGGGAATGAAGCAACTAGCCGGT
CTTGTTCTCTGACTCATGAGACAATGCTTAAATGCTTTAAGGGCAAACACACCCTTCCTC
GTTNGCATCACCAGGGCCAGTTATAACCCTTGCCCTTCTGGAACTTGACTCCCACACCAT
CAAGCCCTGCTCACCCTCCCAGACACATTCCTCTCCCCATCCCCATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAGCACTTTGTACTTATTAATTTCCTCCTCCTGCAACCTAGCAACAAGTAGAGATAGA
ACCTGCCTCTGTCAGAAGAAGAAACTGAGGCTCGGAGAAGCAAGGGTCTCCCGCTTGGCA
AATGGACTCTAATTTGAGGTTTAGAGTGCTGTCAGACACATCTGTTCCCGTGCAATCCCA
GATATTCGCCTCACCCTGCAGGATTTCTAACAGACATTCCCTGTGTCTGGAATGGAACTG
GGGAAAGTATACATTTCTCAACATCCCTCCCCCGCGGTGATTCTGATGTAGGTGGTACAA
TAGCCACACTCAGATATATATTTCACAGTCCATCACTGTAATGAAATTCGGCTTCAACTG
CCACAAATAAAGATAACCTCTTTTTTTTTTGTTGTTTTCATTCTGAAGATCAATAATATA
TGTTTAGGAAACTTGCTGGGCTGGAGGCTGCCTACTGAGAAACTCAGAACATTCCGTGAA
TGGGTCATACTAAGACCTGAACTTGAAGGGCACGGGGCGGGAATGAAGCAACTAGCCGGT
CTTGTTCTCTGACTCATGAGACAATGCTTAAATGCTTTAAGGGCAAACACACCCTTCCTC
GTTNGCATCACCAGGGCCAGTTATAACCCTTGCCCTTCTGGAACTTGACTCCCACACCAT
CAAGCCCTGCTCACCCTCCCAGACACATTCCTCTCCCCATCCCCATGT

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-189, gnl|bosTau2|chr19 (42487717-42487896)
               

               
               3-189, gnl|Hg17|chr17 (59694663-59694855)
               

               
               3-189, gnl|Mm7|chr11 (106722321-106722473)
               


               
               208-708, gnl|bosTau2|chr19 (42487941-42488445)
               

               
               208-708, gnl|Hg17|chr17 (59695647-59696142)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-189, gnl|bosTau2|chr19 (42487717-42487896)
               

               
               3-189, gnl|Hg17|chr17 (59694663-59694855)
               

               
               3-189, gnl|Mm7|chr11 (106722321-106722473)
               


               
               208-708, gnl|bosTau2|chr19 (42487941-42488445)
               

               
               208-708, gnl|Hg17|chr17 (59695647-59696142)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	3-189, gnl\|bosTau2\|chr19 (42487717-42487896)
	3-189, gnl\|Hg17\|chr17 (59694663-59694855)
	3-189, gnl\|Mm7\|chr11 (106722321-106722473)

	208-708, gnl\|bosTau2\|chr19 (42487941-42488445)
	208-708, gnl\|Hg17\|chr17 (59695647-59696142)