Non-Coding RNA Search

Ss1.1-rfli701b_a15.5

Sequence:


               
               CGCTAGCGGGTGCGGTGGGGCTGCTACTTATGTCTGCGCTGCCCGAGGTCCTCGGAGACC
GCTCCAGCCCCGACCGCCCGGCACACCCAGGAGACGCCGCCCAGGTCGGCCCCGAGGCCA
CAGAACTCCGGCGGCGGTCGCCGCCGCCCAAGGATCAGCGCGACCCAGCTCGAGCCGGGG
CGTTGCCCTTGGGAGCGCTGTACACCGCGGCCGTCGTGGCTTTTGTGCTGTACAAGTGTT
TGCAGCAGGGGAAAGATGAGGCTGCTGTTCTCCAAGAGGAGGCAGGCAAGAAGGAATCAT
TGCAGTCAGAGCAACAGCTGGTCCAGCTGACACAACAGCTGGCCCAGACAGAGCAACACC
TGAATAGTCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGTGTGACTACCCTGGCTGGAG
CCCAGCAGGAGCTTCTGCACATGAAGCTACAGACCATCCACCAGCTGCTACAAGAGAACA
AGCCAAACAAGGGTGTGGAGGTTCCAGAACCAGAGGCTCACATACCCTTTTCTAAGAAGT
TATGTATAGAGGAGGACGAAGAAGAGGCTGGTGACAGTCAGGCCCGGGACGAGCCCCTCA
ACTGGAGCACAGGGACAAGGAACCTAGCTACTCCCAGGGAAATGGAGCAGGGCCTAAGGA
GAAGATGCAGGAAAGCTGCAGCAGAGGGCCCCAGTCACAGCCCCCACTGGGAGGGAGGGG
CAACAGCTGATGGTTTAGTAAAACAGAGTCTGTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTAGCGGGTGCGGTGGGGCTGCTACTTATGTCTGCGCTGCCCGAGGTCCTCGGAGACC
GCTCCAGCCCCGACCGCCCGGCACACCCAGGAGACGCCGCCCAGGTCGGCCCCGAGGCCA
CAGAACTCCGGCGGCGGTCGCCGCCGCCCAAGGATCAGCGCGACCCAGCTCGAGCCGGGG
CGTTGCCCTTGGGAGCGCTGTACACCGCGGCCGTCGTGGCTTTTGTGCTGTACAAGTGTT
TGCAGCAGGGGAAAGATGAGGCTGCTGTTCTCCAAGAGGAGGCAGGCAAGAAGGAATCAT
TGCAGTCAGAGCAACAGCTGGTCCAGCTGACACAACAGCTGGCCCAGACAGAGCAACACC
TGAATAGTCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGTGTGACTACCCTGGCTGGAG
CCCAGCAGGAGCTTCTGCACATGAAGCTACAGACCATCCACCAGCTGCTACAAGAGAACA
AGCCAAACAAGGGTGTGGAGGTTCCAGAACCAGAGGCTCACATACCCTTTTCTAAGAAGT
TATGTATAGAGGAGGACGAAGAAGAGGCTGGTGACAGTCAGGCCCGGGACGAGCCCCTCA
ACTGGAGCACAGGGACAAGGAACCTAGCTACTCCCAGGGAAATGGAGCAGGGCCTAAGGA
GAAGATGCAGGAAAGCTGCAGCAGAGGGCCCCAGTCACAGCCCCCACTGGGAGGGAGGGG
CAACAGCTGATGGTTTAGTAAAACAGAGTCTGTTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61832018|ref|XP_592691.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61832018|ref|XP_592691.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               123-242, - strand, RNAz p=0.689258
               

               
               513-608, - strand, RNAz p=0.903332

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-242, - strand, RNAz p=0.689258
               

               
               513-608, - strand, RNAz p=0.903332

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC038673, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC038673, -

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               88-261, gnl|bosTau2|chr8 (28399579-28399752)
               

               
               88-261, gnl|canFam2|chr11 (55223448-55223665)
               

               
               88-261, gnl|dasNov1|scaffold_19153 (37873-38090)
               

               
               88-261, gnl|echTel1|scaffold_324628 (48782-48587)
               

               
               88-261, gnl|hg17|chr9 (35648476-35648694)
               

               
               88-261, gnl|Hg17|chr9 (35648570-35648740)
               

               
               88-261, gnl|loxAfr1|scaffold_10608 (56401-56623)
               

               
               88-261, gnl|mm7|chr4 (43507344-43507543)
               

               
               88-261, gnl|Mm7|chr4 (43507419-43507589)
               

               
               88-261, gnl|monDom2|scaffold_17 (45901107-45900894)
               

               
               88-261, gnl|oryCun1|scaffold_214019 (52833-52617)
               

               
               88-261, gnl|panTro1|chr11 (36208363-36208581)
               

               
               88-261, gnl|rheMac2|chr15 (41865939-41865717)
               

               
               88-261, gnl|rn3|chr5 (59973078-59973277)
               


               
               312-756, gnl|bosTau2|chr27 (18551358-18550940)
               

               
               312-756, gnl|Hg17|chr9 (35650560-35651179)
               

               
               312-756, gnl|Mm7|chr4 (43509158-43509728)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-261, gnl|bosTau2|chr8 (28399579-28399752)
               

               
               88-261, gnl|canFam2|chr11 (55223448-55223665)
               

               
               88-261, gnl|dasNov1|scaffold_19153 (37873-38090)
               

               
               88-261, gnl|echTel1|scaffold_324628 (48782-48587)
               

               
               88-261, gnl|hg17|chr9 (35648476-35648694)
               

               
               88-261, gnl|Hg17|chr9 (35648570-35648740)
               

               
               88-261, gnl|loxAfr1|scaffold_10608 (56401-56623)
               

               
               88-261, gnl|mm7|chr4 (43507344-43507543)
               

               
               88-261, gnl|Mm7|chr4 (43507419-43507589)
               

               
               88-261, gnl|monDom2|scaffold_17 (45901107-45900894)
               

               
               88-261, gnl|oryCun1|scaffold_214019 (52833-52617)
               

               
               88-261, gnl|panTro1|chr11 (36208363-36208581)
               

               
               88-261, gnl|rheMac2|chr15 (41865939-41865717)
               

               
               88-261, gnl|rn3|chr5 (59973078-59973277)
               


               
               312-756, gnl|bosTau2|chr27 (18551358-18550940)
               

               
               312-756, gnl|Hg17|chr9 (35650560-35651179)
               

               
               312-756, gnl|Mm7|chr4 (43509158-43509728)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               lnt (0.284616)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               che (0.136314)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.284616)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               che (0.136314)

	123-242, - strand, RNAz p=0.689258
	513-608, - strand, RNAz p=0.903332

	88-261, gnl\|bosTau2\|chr8 (28399579-28399752)
	88-261, gnl\|canFam2\|chr11 (55223448-55223665)
	88-261, gnl\|dasNov1\|scaffold_19153 (37873-38090)
	88-261, gnl\|echTel1\|scaffold_324628 (48782-48587)
	88-261, gnl\|hg17\|chr9 (35648476-35648694)
	88-261, gnl\|Hg17\|chr9 (35648570-35648740)
	88-261, gnl\|loxAfr1\|scaffold_10608 (56401-56623)
	88-261, gnl\|mm7\|chr4 (43507344-43507543)
	88-261, gnl\|Mm7\|chr4 (43507419-43507589)
	88-261, gnl\|monDom2\|scaffold_17 (45901107-45900894)
	88-261, gnl\|oryCun1\|scaffold_214019 (52833-52617)
	88-261, gnl\|panTro1\|chr11 (36208363-36208581)
	88-261, gnl\|rheMac2\|chr15 (41865939-41865717)
	88-261, gnl\|rn3\|chr5 (59973078-59973277)

	312-756, gnl\|bosTau2\|chr27 (18551358-18550940)
	312-756, gnl\|Hg17\|chr9 (35650560-35651179)
	312-756, gnl\|Mm7\|chr4 (43509158-43509728)

	lnt (0.284616)
	fli (0.202881)
	nep (0.183925)
	cje (0.165235)
	csp (0.161186)
	hyp (0.142837)
	cst (0.140036)
	che (0.136314)