Non-Coding RNA Search

Ss1.1-rfli701b_j13.5

Sequence:


               
               AGTAGGAAAAGGAGTTGAGGAGGCAGGAGTTGTTAGAGATGAATGGTGCTGAATGAATGC
TTTATTCTGTGAAATAGATAGTATAGCCCTGCAAAATGCAGGAGAAGCCAAGATCCTTAA
CTATACCCTGACCACAAGGGGGATCGTTAACCCTAACCATCAAGACATCCTTCTTCTGGT
AAATAATGTGGTTGCTGCCAGTTTTTCCTAATGTATTTGATTTTTTTCACTTCGCTTCTT
TTTTGATGCATGCAGTTGGGATAATGAATCTATTCTACTTGCACAGAGCTGGATGCCCCG
AGAAACAGGTATCATACTTCAATGTTTATGTTCAATATTTGTCATGTTTTATCTCATGTA
ATAATTTTAAAATGCCTTTCCCCCCAAACAGTGATATTTGCCTCAGATGTAAGAATAAGT
TTTGACAAATTTCGGAACTGCATGACAGCAACTGTAATCTCAAAAACCATTATTACAACA
AATCCAGATACACCAGAAGCTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAGGAAAAGGAGTTGAGGAGGCAGGAGTTGTTAGAGATGAATGGTGCTGAATGAATGC
TTTATTCTGTGAAATAGATAGTATAGCCCTGCAAAATGCAGGAGAAGCCAAGATCCTTAA
CTATACCCTGACCACAAGGGGGATCGTTAACCCTAACCATCAAGACATCCTTCTTCTGGT
AAATAATGTGGTTGCTGCCAGTTTTTCCTAATGTATTTGATTTTTTTCACTTCGCTTCTT
TTTTGATGCATGCAGTTGGGATAATGAATCTATTCTACTTGCACAGAGCTGGATGCCCCG
AGAAACAGGTATCATACTTCAATGTTTATGTTCAATATTTGTCATGTTTTATCTCATGTA
ATAATTTTAAAATGCCTTTCCCCCCAAACAGTGATATTTGCCTCAGATGTAAGAATAAGT
TTTGACAAATTTCGGAACTGCATGACAGCAACTGTAATCTCAAAAACCATTATTACAACA
AATCCAGATACACCAGAAGCTAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               327-440, - strand, RNAz p=0.512574

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               327-440, - strand, RNAz p=0.512574

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-490, gnl|bosTau2|chr25 (3182952-3183457)
               

               
               3-490, gnl|Hg17|chr16 (1843527-1843038)
               

               
               3-490, gnl|Mm7|chr17 (23011167-23011841)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-490, gnl|bosTau2|chr25 (3182952-3183457)
               

               
               3-490, gnl|Hg17|chr16 (1843527-1843038)
               

               
               3-490, gnl|Mm7|chr17 (23011167-23011841)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               spl (0.143184)

	3-490, gnl\|bosTau2\|chr25 (3182952-3183457)
	3-490, gnl\|Hg17\|chr16 (1843527-1843038)
	3-490, gnl\|Mm7\|chr17 (23011167-23011841)