Ss1.1-rfli702b_i4.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGAAATAACTAGGAACCATGAAGTGGGTGGTATCAATTTTTTTAATTGTTCTACTAAA TTTTACAGAATCAAGAACAATGCATGAAAATGCATATGGAATAGCTTCCATATTGGATTC TTCCCAATGTTCTGCAGAGATGAACTTAGTTGACCTAGCTACCATATTTTTTGCCCAGTT TGTTCAAGAAGCCACTTACAAGGAAGTAAACCAAATGGTGAAAGATGTATTGACTGTAAT TGAGAAATCCACTGGCAGTGAGCAGCCTGCAGGATGTTTAGAAAACCAGGTATCTGTCTT TCTGGAAGAAATCTGCCATGAAGAGGAAATTCCTGAGAAGTATGGGCTTTCACACTGCTG CAGCCAAAGTGGAGAGGAAAGACATAACTGCTTCTTAGCGCGCAAAAAGGCTGCTCCAGC ATCCATCCCACCTTTCCAGGTTCCAGAACCCGTCACGAGTTGTAAAGCATATGAAGAAAA CAGGGAGCTGTTCATGACCAGGTATATCTATGAGATAGCAAGAAGGCATCCCTTCCTGTA TGCACCTACGATTCTTTCTTTGGCTGCTCAATATGACAAAATAATCCCACCTTGCTGCAA AGCTGAGAATGCAGTTGAATGCTTTCAAACAAAGGCAGCATCAATCACAAAAGAATTAAG AGAAAGCAGCTTGTTAAATCAACATATGTGCACAGTCATGAGACAATTTGGAGCCCGAAC TTTTCGAGCCATAACTGTTACTAAACTGAGTCAAAAGTTTCCCAAAGCTAATTTTACTGA AATTCAGAAACTGGTCCTGGATGTGGCCCATATCCACGAGGAATGCTGCAGAGGAAACGT GCTGGAGTGTCTGCAGGATGCGGAAAGAGTTGTGTCCTACGTATGTTCTCAACAAGATAC TCTGTCAAGCAAAATAGCAGAATGCTGCAAGTTGCCCACCACACTTGAACTTGGTCAATG CATAATTCATGCAGAAAATGATGACAAACCTGAAGGCTTATCTCCAAATCTAAACAGGTT TTTAGGAGAGAGAGATTTCAACCAACTTTCTTCAAGGGAAAAAGATCTCTCCATGGCAAG GTTTACTTATGAGTACTCAAGAAGACATCCTAAACTTGCTGTCCCAGTAATCCTAAGAGT TGCTAAAGGATACCAGGAGTTATTGGAGAAATGTTCGCAGTCTGAAAACCCTCTTGAATG CCAGGATAAAGGGGAAGAAGAATTAGAGAAATACATCCAGGAGAGCCAAGCACTGGCCAA GCGGAGCTGCGGCCTCTTCCAGAAATTAGGAGAATATTACTTACAGAACGCGTTTCTGGT TGCTTACACAAAGAAAGCCCCTCAGCTGACCCCCCCTGAGCTGATGGCCTTGACCAGGAA AATGGCGACCACAGGAGCCGCTTGCTGTCACCTCAGTGAAGACAGGCAGTTGGCCTGTGG TGAGGGAGCGGCTGACCTTATCATCGGGCAGTTGTGCATCAGGCACGAAGAGATGCCCAT AAACCCTGGTGTTGGCCAGTGCTGCACCTCTTCATATGCCAACAGGAGACCATGCTTCAG CAGCTTGGTGTTGGATGAGACATACGTGCCTCCGCCATTCTCTGATGACAAGTTCATCTT CCATAAGGATCTGTGCCAAGCTCAGGGTGTAGCACTGCAAACAATGAAGCAGCAGTTTCT TATTAACCTTGTGAAGCAAAAGCCACAAATAACAGAGGAACAACTTGAGGCCGTCATTGC AGATTTCTCTGGTCTACTGGAAAAGTGCTGCCAAGGCCAAGAGCAAGAAGTCTGCTTTGC AGAAGAGGGTCCAGCACTGATTTCAAAAACACGTGCTTCTTTGGGAGTTTAAATTACTTC AGGGGGAAGAGAAGAAGACAGGTCTTTATGGTTTGGTGTGAACTTTTCCTTTTAATTCTA ACTGATTTATGCTTCTTGTGAATTAAAAAAATGATGAAGACTTTTATGTGGGATTTCCCT GTTATAGAAATAAAGTATCTCCAAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAATAATTCTAACTGATTTATGCTTCTTGTGAATTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGAAATAACTAGGAACCATGAAGTGGGTGGTATCAATTTTTTTAATTGTTCTACTAAA TTTTACAGAATCAAGAACAATGCATGAAAATGCATATGGAATAGCTTCCATATTGGATTC TTCCCAATGTTCTGCAGAGATGAACTTAGTTGACCTAGCTACCATATTTTTTGCCCAGTT TGTTCAAGAAGCCACTTACAAGGAAGTAAACCAAATGGTGAAAGATGTATTGACTGTAAT TGAGAAATCCACTGGCAGTGAGCAGCCTGCAGGATGTTTAGAAAACCAGGTATCTGTCTT TCTGGAAGAAATCTGCCATGAAGAGGAAATTCCTGAGAAGTATGGGCTTTCACACTGCTG CAGCCAAAGTGGAGAGGAAAGACATAACTGCTTCTTAGCGCGCAAAAAGGCTGCTCCAGC ATCCATCCCACCTTTCCAGGTTCCAGAACCCGTCACGAGTTGTAAAGCATATGAAGAAAA CAGGGAGCTGTTCATGACCAGGTATATCTATGAGATAGCAAGAAGGCATCCCTTCCTGTA TGCACCTACGATTCTTTCTTTGGCTGCTCAATATGACAAAATAATCCCACCTTGCTGCAA AGCTGAGAATGCAGTTGAATGCTTTCAAACAAAGGCAGCATCAATCACAAAAGAATTAAG AGAAAGCAGCTTGTTAAATCAACATATGTGCACAGTCATGAGACAATTTGGAGCCCGAAC TTTTCGAGCCATAACTGTTACTAAACTGAGTCAAAAGTTTCCCAAAGCTAATTTTACTGA AATTCAGAAACTGGTCCTGGATGTGGCCCATATCCACGAGGAATGCTGCAGAGGAAACGT GCTGGAGTGTCTGCAGGATGCGGAAAGAGTTGTGTCCTACGTATGTTCTCAACAAGATAC TCTGTCAAGCAAAATAGCAGAATGCTGCAAGTTGCCCACCACACTTGAACTTGGTCAATG CATAATTCATGCAGAAAATGATGACAAACCTGAAGGCTTATCTCCAAATCTAAACAGGTT TTTAGGAGAGAGAGATTTCAACCAACTTTCTTCAAGGGAAAAAGATCTCTCCATGGCAAG GTTTACTTATGAGTACTCAAGAAGACATCCTAAACTTGCTGTCCCAGTAATCCTAAGAGT TGCTAAAGGATACCAGGAGTTATTGGAGAAATGTTCGCAGTCTGAAAACCCTCTTGAATG CCAGGATAAAGGGGAAGAAGAATTAGAGAAATACATCCAGGAGAGCCAAGCACTGGCCAA GCGGAGCTGCGGCCTCTTCCAGAAATTAGGAGAATATTACTTACAGAACGCGTTTCTGGT TGCTTACACAAAGAAAGCCCCTCAGCTGACCCCCCCTGAGCTGATGGCCTTGACCAGGAA AATGGCGACCACAGGAGCCGCTTGCTGTCACCTCAGTGAAGACAGGCAGTTGGCCTGTGG TGAGGGAGCGGCTGACCTTATCATCGGGCAGTTGTGCATCAGGCACGAAGAGATGCCCAT AAACCCTGGTGTTGGCCAGTGCTGCACCTCTTCATATGCCAACAGGAGACCATGCTTCAG CAGCTTGGTGTTGGATGAGACATACGTGCCTCCGCCATTCTCTGATGACAAGTTCATCTT CCATAAGGATCTGTGCCAAGCTCAGGGTGTAGCACTGCAAACAATGAAGCAGCAGTTTCT TATTAACCTTGTGAAGCAAAAGCCACAAATAACAGAGGAACAACTTGAGGCCGTCATTGC AGATTTCTCTGGTCTACTGGAAAAGTGCTGCCAAGGCCAAGAGCAAGAAGTCTGCTTTGC AGAAGAGGGTCCAGCACTGATTTCAAAAACACGTGCTTCTTTGGGAGTTTAAATTACTTC AGGGGGAAGAGAAGAAGACAGGTCTTTATGGTTTGGTGTGAACTTTTCCTTTTAATTCTA ACTGATTTATGCTTCTTGTGAATTAAAAAAATGATGAAGACTTTTATGTGGGATTTCCCT GTTATAGAAATAAAGTATCTCCAAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAATAATTCTAACTGATTTATGCTTCTTGTGAATTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 901-1082, - strand, RNAz p=0.848447 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 901-1082, - strand, RNAz p=0.848447 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 5-114, gnl|bosTau2|chr28 (25527565-25527456) | |
| 5-114, gnl|canFam2|chr13 (65120662-65121038) | |
| 5-114, gnl|dasNov1|scaffold_258518 (234-596) | |
| 5-114, gnl|hg17|chr4 (74666744-74667109) | |
| 5-114, gnl|Hg17|chr4 (74667000-74667109) | |
| 5-114, gnl|loxAfr1|scaffold_33195 (34350-34018) | |
| 5-114, gnl|mm7|chr5 (90461647-90461990) | |
| 5-114, gnl|Mm7|chr5 (90461881-90461990) | |
| 5-114, gnl|monDom2|scaffold_32 (18535356-18535717) | |
| 5-114, gnl|oryCun1|scaffold_197054 (11095-10727) | |
| 5-114, gnl|panTro1|chr3 (59045114-59044750) | |
| 5-114, gnl|rheMac2|chr5 (56239981-56239617) | |
| 5-114, gnl|rn3|chr14 (19110947-19110595) | |
| 288-504, gnl|bosTau2|chr28 (25523839-25523623) | |
| 288-504, gnl|canFam2|chr13 (65124928-65125235) | |
| 288-504, gnl|dasNov1|scaffold_5878 (16644-16338) | |
| 288-504, gnl|echTel1|scaffold_211751 (379-65) | |
| 288-504, gnl|hg17|chr4 (74671290-74671598) | |
| 288-504, gnl|Hg17|chr4 (74671352-74671568) | |
| 288-504, gnl|loxAfr1|scaffold_74769 (9514-9206) | |
| 288-504, gnl|mm7|chr5 (90467015-90467304) | |
| 288-504, gnl|Mm7|chr5 (90467077-90467293) | |
| 288-504, gnl|monDom2|scaffold_32 (18540434-18540745) | |
| 288-504, gnl|oryCun1|scaffold_197054 (6708-6422) | |
| 288-504, gnl|panTro1|chr3 (59040465-59040157) | |
| 288-504, gnl|rheMac2|chr5 (56235401-56235094) | |
| 288-504, gnl|rn3|chr14 (19105446-19105162) | |
| 862-1082, gnl|bosTau2|chr28 (25515383-25515163) | |
| 862-1082, gnl|Hg17|chr4 (74678213-74678430) | |
| 862-1082, gnl|Mm7|chr5 (90472521-90472738) | |
| 1213-1313, gnl|bosTau2|chr28 (25512919-25512819) | |
| 1213-1313, gnl|canFam2|chr13 (65134650-65134909) | |
| 1213-1313, gnl|dasNov1|scaffold_144572 (4299-4551) | |
| 1213-1313, gnl|echTel1|scaffold_313896 (6397-6648) | |
| 1213-1313, gnl|hg17|chr4 (74680679-74680929) | |
| 1213-1313, gnl|Hg17|chr4 (74680787-74680887) | |
| 1213-1313, gnl|loxAfr1|scaffold_53048 (9032-9288) | |
| 1213-1313, gnl|mm7|chr5 (90475343-90475586) | |
| 1213-1313, gnl|Mm7|chr5 (90475445-90475545) | |
| 1213-1313, gnl|monDom2|scaffold_32 (18560404-18560637) | |
| 1213-1313, gnl|oryCun1|scaffold_199505 (36550-36802) | |
| 1213-1313, gnl|panTro1|chr3 (59031754-59031504) | |
| 1213-1313, gnl|rheMac2|chr5 (56226661-56226410) | |
| 1213-1313, gnl|rn3|chr14 (19096819-19096546) | |
| 1450-1676, gnl|bosTau2|chr28 (25509889-25509663) | |
| 1450-1676, gnl|Hg17|chr4 (74683152-74683378) | |
| 1450-1676, gnl|Mm7|chr5 (90477635-90477861) | |
| 1860-2007, gnl|bosTau2|chr28 (25506462-25506312) | |
| 1860-2007, gnl|Hg17|chr4 (74686380-74686527) | |
| 1860-2007, gnl|Mm7|chr5 (90479829-90479969) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-114, gnl|bosTau2|chr28 (25527565-25527456) | |
| 5-114, gnl|canFam2|chr13 (65120662-65121038) | |
| 5-114, gnl|dasNov1|scaffold_258518 (234-596) | |
| 5-114, gnl|hg17|chr4 (74666744-74667109) | |
| 5-114, gnl|Hg17|chr4 (74667000-74667109) | |
| 5-114, gnl|loxAfr1|scaffold_33195 (34350-34018) | |
| 5-114, gnl|mm7|chr5 (90461647-90461990) | |
| 5-114, gnl|Mm7|chr5 (90461881-90461990) | |
| 5-114, gnl|monDom2|scaffold_32 (18535356-18535717) | |
| 5-114, gnl|oryCun1|scaffold_197054 (11095-10727) | |
| 5-114, gnl|panTro1|chr3 (59045114-59044750) | |
| 5-114, gnl|rheMac2|chr5 (56239981-56239617) | |
| 5-114, gnl|rn3|chr14 (19110947-19110595) | |
| 288-504, gnl|bosTau2|chr28 (25523839-25523623) | |
| 288-504, gnl|canFam2|chr13 (65124928-65125235) | |
| 288-504, gnl|dasNov1|scaffold_5878 (16644-16338) | |
| 288-504, gnl|echTel1|scaffold_211751 (379-65) | |
| 288-504, gnl|hg17|chr4 (74671290-74671598) | |
| 288-504, gnl|Hg17|chr4 (74671352-74671568) | |
| 288-504, gnl|loxAfr1|scaffold_74769 (9514-9206) | |
| 288-504, gnl|mm7|chr5 (90467015-90467304) | |
| 288-504, gnl|Mm7|chr5 (90467077-90467293) | |
| 288-504, gnl|monDom2|scaffold_32 (18540434-18540745) | |
| 288-504, gnl|oryCun1|scaffold_197054 (6708-6422) | |
| 288-504, gnl|panTro1|chr3 (59040465-59040157) | |
| 288-504, gnl|rheMac2|chr5 (56235401-56235094) | |
| 288-504, gnl|rn3|chr14 (19105446-19105162) | |
| 862-1082, gnl|bosTau2|chr28 (25515383-25515163) | |
| 862-1082, gnl|Hg17|chr4 (74678213-74678430) | |
| 862-1082, gnl|Mm7|chr5 (90472521-90472738) | |
| 1213-1313, gnl|bosTau2|chr28 (25512919-25512819) | |
| 1213-1313, gnl|canFam2|chr13 (65134650-65134909) | |
| 1213-1313, gnl|dasNov1|scaffold_144572 (4299-4551) | |
| 1213-1313, gnl|echTel1|scaffold_313896 (6397-6648) | |
| 1213-1313, gnl|hg17|chr4 (74680679-74680929) | |
| 1213-1313, gnl|Hg17|chr4 (74680787-74680887) | |
| 1213-1313, gnl|loxAfr1|scaffold_53048 (9032-9288) | |
| 1213-1313, gnl|mm7|chr5 (90475343-90475586) | |
| 1213-1313, gnl|Mm7|chr5 (90475445-90475545) | |
| 1213-1313, gnl|monDom2|scaffold_32 (18560404-18560637) | |
| 1213-1313, gnl|oryCun1|scaffold_199505 (36550-36802) | |
| 1213-1313, gnl|panTro1|chr3 (59031754-59031504) | |
| 1213-1313, gnl|rheMac2|chr5 (56226661-56226410) | |
| 1213-1313, gnl|rn3|chr14 (19096819-19096546) | |
| 1450-1676, gnl|bosTau2|chr28 (25509889-25509663) | |
| 1450-1676, gnl|Hg17|chr4 (74683152-74683378) | |
| 1450-1676, gnl|Mm7|chr5 (90477635-90477861) | |
| 1860-2007, gnl|bosTau2|chr28 (25506462-25506312) | |
| 1860-2007, gnl|Hg17|chr4 (74686380-74686527) | |
| 1860-2007, gnl|Mm7|chr5 (90479829-90479969) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| eli (20.1913) | |
| fli (10.7527) | |
| elu (0.385356) | |
| ese (0.253004) | |
| fty (0.17584) | |
| eje (0.0988338) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eli (20.1913) | |
| fli (10.7527) | |
| elu (0.385356) | |
| ese (0.253004) | |
| fty (0.17584) | |
| eje (0.0988338) |