Ss1.1-rfli702b_o14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGCGGCTCGGGATGCGAGGTGGGCGGGGGCGGGCTGAAAGTTGGACAAGCAGGAAGT GAACCGACGGCCGCCCGGGAGGAAACCGACTTAGGCGAGTTCTGCTGCCGCCAGGCCCCA GCCGCTCGGAGACATGGAGGAGGCCAGTGGCGGTGGAGGGGATGACCGCGTGCGGAACCT GCGGAGTGAAGTGGAGGGAGTCAAGAATATTATGACCCAGAATGTGGAGCGGATCCTGGC CCGGGGAGAAAACTTGGACCATCTCCGCAACAAGACAGAGGATCTGGAAGCCACATCTGA GCACTTCAAGACCACGTCCCAGAAGGTGGCTCGGAAGTTCTGGTGGAAGAACGTGAAGAT GATCGTCATCATCTGCGTGATCGTTTTTATCATCATCCTCTTCATCGTGCTCTTTGCCAC CAACGTCATCCCTTAAAATAACTTAGGGAACCCCTTCCACCCTGCCCTCCTCTTCAGGGC AACCTTCCATAGTGGGTGCCGAGAGGGGCCCTCTCTCCCATGCTCCTCCACAAAGAATGC TGCTCGAGCCTCCCGCCTCTCACTCTGAGACCCCCGCACTGTCTGCCCCCGTGAGTACCT TGGTCCCTGGAAGGAGAGAGCCAGACTGTGGCTGTGTCTCAGGGGGCCTCAGAGGTGGTT GGAGAGACAGACCCAGAGGGCCCAGCATGTGGCTGGGAAGCTGATGGAACTGACGGTGGC CAGTGGGCAATAAAGACCTTTCTGTATCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGCGGCTCGGGATGCGAGGTGGGCGGGGGCGGGCTGAAAGTTGGACAAGCAGGAAGT GAACCGACGGCCGCCCGGGAGGAAACCGACTTAGGCGAGTTCTGCTGCCGCCAGGCCCCA GCCGCTCGGAGACATGGAGGAGGCCAGTGGCGGTGGAGGGGATGACCGCGTGCGGAACCT GCGGAGTGAAGTGGAGGGAGTCAAGAATATTATGACCCAGAATGTGGAGCGGATCCTGGC CCGGGGAGAAAACTTGGACCATCTCCGCAACAAGACAGAGGATCTGGAAGCCACATCTGA GCACTTCAAGACCACGTCCCAGAAGGTGGCTCGGAAGTTCTGGTGGAAGAACGTGAAGAT GATCGTCATCATCTGCGTGATCGTTTTTATCATCATCCTCTTCATCGTGCTCTTTGCCAC CAACGTCATCCCTTAAAATAACTTAGGGAACCCCTTCCACCCTGCCCTCCTCTTCAGGGC AACCTTCCATAGTGGGTGCCGAGAGGGGCCCTCTCTCCCATGCTCCTCCACAAAGAATGC TGCTCGAGCCTCCCGCCTCTCACTCTGAGACCCCCGCACTGTCTGCCCCCGTGAGTACCT TGGTCCCTGGAAGGAGAGAGCCAGACTGTGGCTGTGTCTCAGGGGGCCTCAGAGGTGGTT GGAGAGACAGACCCAGAGGGCCCAGCATGTGGCTGGGAAGCTGATGGAACTGACGGTGGC CAGTGGGCAATAAAGACCTTTCTGTATCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 138-253, + strand, RNAz p=0.571596 | |
| 296-532, - strand, RNAz p=0.770768 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 138-253, + strand, RNAz p=0.571596 | |
| 296-532, - strand, RNAz p=0.770768 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-137, gnl|bosTau2|chr11 (36422754-36422617) | |
| 1-137, gnl|canFam2|chr17 (42564661-42564313) | |
| 1-137, gnl|dasNov1|scaffold_111593 (7186-6902) | |
| 1-137, gnl|echTel1|scaffold_278834 (43678-43352) | |
| 1-137, gnl|hg17|chr2 (85716093-85716433) | |
| 1-137, gnl|Hg17|chr2 (85716294-85716431) | |
| 1-137, gnl|loxAfr1|scaffold_69171 (8312-7996) | |
| 1-137, gnl|mm7|chr6 (72408701-72408404) | |
| 1-137, gnl|Mm7|chr6 (72408541-72408404) | |
| 1-137, gnl|monDom2|scaffold_68 (9450773-9451178) | |
| 1-137, gnl|oryCun1|scaffold_200853 (180299-180627) | |
| 1-137, gnl|panTro1|chr12 (88590979-88591319) | |
| 1-137, gnl|rheMac2|chr13 (86149385-86149725) | |
| 1-137, gnl|rn3|chr4 (105941895-105941576) | |
| 138-295, gnl|bosTau2|chr11 (36421350-36421193) | |
| 138-295, gnl|canFam2|chr17 (42563001-42562778) | |
| 138-295, gnl|danRer3|chr5 (19897342-19897165) | |
| 138-295, gnl|echTel1|scaffold_254404 (4532-4340) | |
| 138-295, gnl|fr1|chrUn (295887240-295887440) | |
| 138-295, gnl|hg17|chr2 (85717783-85717980) | |
| 138-295, gnl|Hg17|chr2 (85717788-85717948) | |
| 138-295, gnl|loxAfr1|scaffold_69171 (6675-6476) | |
| 138-295, gnl|mm7|chr6 (72406360-72406163) | |
| 138-295, gnl|Mm7|chr6 (72406350-72406193) | |
| 138-295, gnl|monDom2|scaffold_68 (9453211-9453402) | |
| 138-295, gnl|oryCun1|scaffold_200853 (181955-182127) | |
| 138-295, gnl|panTro1|chr12 (88592711-88592908) | |
| 138-295, gnl|rheMac2|chr13 (86151077-86151274) | |
| 138-295, gnl|rn3|chr4 (105939395-105939201) | |
| 296-752, gnl|bosTau2|chr11 (36419945-36419503) | |
| 296-752, gnl|Hg17|chr2 (85720357-85720812) | |
| 296-752, gnl|Mm7|chr6 (72403584-72403160) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-137, gnl|bosTau2|chr11 (36422754-36422617) | |
| 1-137, gnl|canFam2|chr17 (42564661-42564313) | |
| 1-137, gnl|dasNov1|scaffold_111593 (7186-6902) | |
| 1-137, gnl|echTel1|scaffold_278834 (43678-43352) | |
| 1-137, gnl|hg17|chr2 (85716093-85716433) | |
| 1-137, gnl|Hg17|chr2 (85716294-85716431) | |
| 1-137, gnl|loxAfr1|scaffold_69171 (8312-7996) | |
| 1-137, gnl|mm7|chr6 (72408701-72408404) | |
| 1-137, gnl|Mm7|chr6 (72408541-72408404) | |
| 1-137, gnl|monDom2|scaffold_68 (9450773-9451178) | |
| 1-137, gnl|oryCun1|scaffold_200853 (180299-180627) | |
| 1-137, gnl|panTro1|chr12 (88590979-88591319) | |
| 1-137, gnl|rheMac2|chr13 (86149385-86149725) | |
| 1-137, gnl|rn3|chr4 (105941895-105941576) | |
| 138-295, gnl|bosTau2|chr11 (36421350-36421193) | |
| 138-295, gnl|canFam2|chr17 (42563001-42562778) | |
| 138-295, gnl|danRer3|chr5 (19897342-19897165) | |
| 138-295, gnl|echTel1|scaffold_254404 (4532-4340) | |
| 138-295, gnl|fr1|chrUn (295887240-295887440) | |
| 138-295, gnl|hg17|chr2 (85717783-85717980) | |
| 138-295, gnl|Hg17|chr2 (85717788-85717948) | |
| 138-295, gnl|loxAfr1|scaffold_69171 (6675-6476) | |
| 138-295, gnl|mm7|chr6 (72406360-72406163) | |
| 138-295, gnl|Mm7|chr6 (72406350-72406193) | |
| 138-295, gnl|monDom2|scaffold_68 (9453211-9453402) | |
| 138-295, gnl|oryCun1|scaffold_200853 (181955-182127) | |
| 138-295, gnl|panTro1|chr12 (88592711-88592908) | |
| 138-295, gnl|rheMac2|chr13 (86151077-86151274) | |
| 138-295, gnl|rn3|chr4 (105939395-105939201) | |
| 296-752, gnl|bosTau2|chr11 (36419945-36419503) | |
| 296-752, gnl|Hg17|chr2 (85720357-85720812) | |
| 296-752, gnl|Mm7|chr6 (72403584-72403160) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| duo (0.864006) | |
| ill (0.702371) | |
| nmm (0.664011) | |
| nco (0.646935) | |
| cly (0.603209) | |
| col (0.585023) | |
| pty (0.570858) | |
| jca (0.569801) | |
| hlv (0.557025) | |
| eje (0.494169) | |
| cli (0.458435) | |
| nca (0.410621) | |
| fli (0.405762) | |
| jej (0.395687) | |
| csp (0.322373) | |
| cga (0.279096) | |
| ute (0.265569) | |
| cov (0.264306) | |
| med (0.232504) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| nbm (0.0993246) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.864006) | |
| ill (0.702371) | |
| nmm (0.664011) | |
| nco (0.646935) | |
| cly (0.603209) | |
| col (0.585023) | |
| pty (0.570858) | |
| jca (0.569801) | |
| hlv (0.557025) | |
| eje (0.494169) | |
| cli (0.458435) | |
| nca (0.410621) | |
| fli (0.405762) | |
| jej (0.395687) | |
| csp (0.322373) | |
| cga (0.279096) | |
| ute (0.265569) | |
| cov (0.264306) | |
| med (0.232504) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| nbm (0.0993246) |