Ss1.1-rfli704b_j16.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTGCAGGTGCCTTCCTGTCTCATCATGGCACTGCTCTGGGCCCTCGCAGTCCTGAGCC TCCTTCCTCTGCTGAACGCCCAGAACCCGCTGTGCGCCAACTTGACGGCAGTGCCCATCA CCAATGCCACCTTGGACTTGATCTCCGGCAAGTGGTATTATATCGGCTCGGCCTTCCGAA ACCCCCAGTACAATGAGTCGGCCAGATCCATCCAGGCAGCCTTCTTTTTCTTTGATCCCA AGCCCGCGGAGGACAAGATAAACCTCAGAGAGTACCAGACCATAGGGAACCAGTGCATCT ATAACGACAGCTCCCTGAAGGTCCATCGGGAGAATGGAAGCCTATCGAAACACGAGATGG GCAGAGAACACGTTGCTGACCTGCTGTTAACCAAGGTCCCCAAGACCTTCATGCTCATCA ATTCCTTGCACGATAAGAACAACGTGGGGCTCTCCTTCTACGCCGACAAGGCGGAGGTGA CTCCGGAGCAGATGAAAGAGTTCCATGATGCTATTGAGTGCACGGGAATCCACAAGTCAG AAATCACATACACCGACGAGAAAAAGGATCTGTGTGGGCCGCTGGAGAAGCAGCATGAGG AGGAAAGGAAGAAGGAGAAGGAGAAGGAGGGGTCCTAGCATTGGGTCAGGTCCTTGGGCA CCTTGGAGGCCCATCCTCAGCACCTCCCACCCACCCTTTGCACCTCAATTCTCTCCCTCA GTTGCATCAATAAAACTTCGCATTTGGTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTGCAGGTGCCTTCCTGTCTCATCATGGCACTGCTCTGGGCCCTCGCAGTCCTGAGCC TCCTTCCTCTGCTGAACGCCCAGAACCCGCTGTGCGCCAACTTGACGGCAGTGCCCATCA CCAATGCCACCTTGGACTTGATCTCCGGCAAGTGGTATTATATCGGCTCGGCCTTCCGAA ACCCCCAGTACAATGAGTCGGCCAGATCCATCCAGGCAGCCTTCTTTTTCTTTGATCCCA AGCCCGCGGAGGACAAGATAAACCTCAGAGAGTACCAGACCATAGGGAACCAGTGCATCT ATAACGACAGCTCCCTGAAGGTCCATCGGGAGAATGGAAGCCTATCGAAACACGAGATGG GCAGAGAACACGTTGCTGACCTGCTGTTAACCAAGGTCCCCAAGACCTTCATGCTCATCA ATTCCTTGCACGATAAGAACAACGTGGGGCTCTCCTTCTACGCCGACAAGGCGGAGGTGA CTCCGGAGCAGATGAAAGAGTTCCATGATGCTATTGAGTGCACGGGAATCCACAAGTCAG AAATCACATACACCGACGAGAAAAAGGATCTGTGTGGGCCGCTGGAGAAGCAGCATGAGG AGGAAAGGAAGAAGGAGAAGGAGAAGGAGGGGTCCTAGCATTGGGTCAGGTCCTTGGGCA CCTTGGAGGCCCATCCTCAGCACCTCCCACCCACCCTTTGCACCTCAATTCTCTCCCTCA GTTGCATCAATAAAACTTCGCATTTGGTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 565-679, - strand, RNAz p=0.898929 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 565-679, - strand, RNAz p=0.898929 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 115-283, gnl|bosTau2|chr8 (57539999-57540169) | |
| 115-283, gnl|canFam2|chr11 (71588050-71588442) | |
| 115-283, gnl|dasNov1|scaffold_34131 (780-394) | |
| 115-283, gnl|echTel1|scaffold_53273 (3032-3421) | |
| 115-283, gnl|hg17|chr9 (114165389-114165770) | |
| 115-283, gnl|Hg17|chr9 (114165469-114165639) | |
| 115-283, gnl|loxAfr1|scaffold_22720 (4332-4749) | |
| 115-283, gnl|mm7|chr4 (62778654-62779045) | |
| 115-283, gnl|Mm7|chr4 (62778728-62778907) | |
| 115-283, gnl|oryCun1|scaffold_214303 (214377-214743) | |
| 115-283, gnl|panTro1|chrUn_random (191976265-191975899) | |
| 115-283, gnl|rheMac2|chr15 (21797172-21796806) | |
| 115-283, gnl|rn3|chr5 (80330547-80330939) | |
| 565-734, gnl|bosTau2|chr8 (57542859-57543016) | |
| 565-734, gnl|canFam2|chr11 (71590178-71590501) | |
| 565-734, gnl|dasNov1|scaffold_8909 (12040-11715) | |
| 565-734, gnl|echTel1|scaffold_53273 (5833-6135) | |
| 565-734, gnl|hg17|chr9 (114168102-114168416) | |
| 565-734, gnl|Hg17|chr9 (114168124-114168290) | |
| 565-734, gnl|loxAfr1|scaffold_22720 (7458-7788) | |
| 565-734, gnl|oryCun1|scaffold_214303 (217173-217479) | |
| 565-734, gnl|panTro1|chrUn_random (191973563-191973248) | |
| 565-734, gnl|rheMac2|chr15 (21794469-21794116) | |
| 565-734, gnl|rn3|chr5 (80333097-80333384) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-283, gnl|bosTau2|chr8 (57539999-57540169) | |
| 115-283, gnl|canFam2|chr11 (71588050-71588442) | |
| 115-283, gnl|dasNov1|scaffold_34131 (780-394) | |
| 115-283, gnl|echTel1|scaffold_53273 (3032-3421) | |
| 115-283, gnl|hg17|chr9 (114165389-114165770) | |
| 115-283, gnl|Hg17|chr9 (114165469-114165639) | |
| 115-283, gnl|loxAfr1|scaffold_22720 (4332-4749) | |
| 115-283, gnl|mm7|chr4 (62778654-62779045) | |
| 115-283, gnl|Mm7|chr4 (62778728-62778907) | |
| 115-283, gnl|oryCun1|scaffold_214303 (214377-214743) | |
| 115-283, gnl|panTro1|chrUn_random (191976265-191975899) | |
| 115-283, gnl|rheMac2|chr15 (21797172-21796806) | |
| 115-283, gnl|rn3|chr5 (80330547-80330939) | |
| 565-734, gnl|bosTau2|chr8 (57542859-57543016) | |
| 565-734, gnl|canFam2|chr11 (71590178-71590501) | |
| 565-734, gnl|dasNov1|scaffold_8909 (12040-11715) | |
| 565-734, gnl|echTel1|scaffold_53273 (5833-6135) | |
| 565-734, gnl|hg17|chr9 (114168102-114168416) | |
| 565-734, gnl|Hg17|chr9 (114168124-114168290) | |
| 565-734, gnl|loxAfr1|scaffold_22720 (7458-7788) | |
| 565-734, gnl|oryCun1|scaffold_214303 (217173-217479) | |
| 565-734, gnl|panTro1|chrUn_random (191973563-191973248) | |
| 565-734, gnl|rheMac2|chr15 (21794469-21794116) | |
| 565-734, gnl|rn3|chr5 (80333097-80333384) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| fli (199.838) | |
| eli (37.0427) | |
| cli (25.8252) | |
| lun (2.25734) | |
| pty (0.713572) | |
| nms (0.641574) | |
| elu (0.385356) | |
| eru (0.240096) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (199.838) | |
| eli (37.0427) | |
| cli (25.8252) | |
| lun (2.25734) | |
| pty (0.713572) | |
| nms (0.641574) | |
| elu (0.385356) | |
| eru (0.240096) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| jej (0.0989218) |