Non-Coding RNA Search

Ss1.1-rfli711b_l8.5

Sequence:


               
               CGGCCGCGGGGACAGCCCCTTTCTGGGTGGCTCCTTGCTGGGCAGTGCTAGTGGGGAGGG
CGCCGGCCCGGGAGCCGCTGGGCGGGTTCCCGGCCGCACATCTGGCGCCCTGACTGTTTA
TCCACTTGACATTTGAAAAGATGCTTTTTTTCCTCTTCCCCCAGATGTCTTGACAGGATC
ACTGGGGCTCTTTGTGACTGAGGGTGGTCAAACTGCCGCCAGAGGAGATGGGGTCTCAAA
GCGAGAGCTGGGGTGGGGGAGGGGAGTAAAAGGCCTAGATTTTGCTGCTGTGGGTTCCAC
AGCCGTGGTCGCTTTGGGGGGCGGGGAAGGGGCCCAAAGCGGTGCACACACATGGTCATT
CATCGCGGCACACATCCCTCATGGGCGGTGTGTGCGTGCAGGCGTGTGTGTGTGTGTGTG
TGCACGTGTGCGAACACACACACACGCATGCTAGCCTGTTCACGGACCCAGCCCAGGGCC
AGCAGTCCCTTCAGCAGAGCCGTGTCACCCTTGGGAACCCACACCCCGGTTGCTCTAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCGCGGGGACAGCCCCTTTCTGGGTGGCTCCTTGCTGGGCAGTGCTAGTGGGGAGGG
CGCCGGCCCGGGAGCCGCTGGGCGGGTTCCCGGCCGCACATCTGGCGCCCTGACTGTTTA
TCCACTTGACATTTGAAAAGATGCTTTTTTTCCTCTTCCCCCAGATGTCTTGACAGGATC
ACTGGGGCTCTTTGTGACTGAGGGTGGTCAAACTGCCGCCAGAGGAGATGGGGTCTCAAA
GCGAGAGCTGGGGTGGGGGAGGGGAGTAAAAGGCCTAGATTTTGCTGCTGTGGGTTCCAC
AGCCGTGGTCGCTTTGGGGGGCGGGGAAGGGGCCCAAAGCGGTGCACACACATGGTCATT
CATCGCGGCACACATCCCTCATGGGCGGTGTGTGCGTGCAGGCGTGTGTGTGTGTGTGTG
TGCACGTGTGCGAACACACACACACGCATGCTAGCCTGTTCACGGACCCAGCCCAGGGCC
AGCAGTCCCTTCAGCAGAGCCGTGTCACCCTTGGGAACCCACACCCCGGTTGCTCTAATT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               68-180, - strand, RNAz p=0.883438
               

               
               337-509, - strand, RNAz p=0.999994

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               68-180, - strand, RNAz p=0.883438
               

               
               337-509, - strand, RNAz p=0.999994

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               421-484, + strand, RNAmicro p=0.998001
               

               
               405-494, - strand, RNAmicro p=0.931224

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               421-484, + strand, RNAmicro p=0.998001
               

               
               405-494, - strand, RNAmicro p=0.931224

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               68-534, gnl|bosTau2|chrX (13622473-13622004)
               

               
               68-534, gnl|Hg17|chrX (152437110-152437582)
               

               
               68-534, gnl|Mm7|chrX (69029693-69030116)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-534, gnl|bosTau2|chrX (13622473-13622004)
               

               
               68-534, gnl|Hg17|chrX (152437110-152437582)
               

               
               68-534, gnl|Mm7|chrX (69029693-69030116)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fli (0.202881)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               ecc (0.115035)

	68-180, - strand, RNAz p=0.883438
	337-509, - strand, RNAz p=0.999994

	421-484, + strand, RNAmicro p=0.998001
	405-494, - strand, RNAmicro p=0.931224

	68-534, gnl\|bosTau2\|chrX (13622473-13622004)
	68-534, gnl\|Hg17\|chrX (152437110-152437582)
	68-534, gnl\|Mm7\|chrX (69029693-69030116)