Non-Coding RNA Search

Ss1.1-rfli711b_p19.5

Sequence:


               
               GGCGGACCCGGCGAGAGGCGGCGGCGGGAGCGGCGGTGATGGACGGGTCCGGGGAGCAAC
CCAGAGGCGGGGGGCCCACCAGCTCTGAGCAGATCATGAAGACAGGGGCCCTTTTGCTTC
AGGGTTTCATCCAGGATCGAGCAGGGCGAATGGGGGGAGAGACACCTGAGCTGGGCCTGG
AGCAGGTGCCTCAGGATGCATCTACCAAGAAGTTGAGCGAGTGTCTCAAGCGCATTGGAG
ATGAACTGGACAGTAACATGGAGCTGCAGAGGATGATCGCAGCCGTGGACACGGACTCCC
CCCGAGAAGTCTTTTTCCGAGTGGCGGCCGAAATGTTTGCTGACGGCAACTTCAACTGGG
GCCGGGTGGTCGCGCTTTTCTACTTTGCCAGTAAACTGGTGCTCAAGGCCCTGTGCACCA
GGGTGCCCGAACTGATCAGGACCATCATGGGCTGGACGCTGGACTTCCTTCGAGATCGGC
TGCTGGGCTGGATCCAGGACCAGGGTGGTTGGGACGGCCTCCTCTCCTACTTTGGGACGC
CCACGTGGCAGACGGTGACCATCTTCGTGGCCGGAGTGCTCACCGCCTCGCTCACCATCT
GGAAGAAGATGGGCTGAGGCCGCCAGCCGCCTTGGACTGTGTCTTTTCTGCATAAATTAT
GGAATTTTTCCAGCGGGGTGGGGGGGTCGGGGGGCCACGGGGGCATTTTTCTTACTTTTG
TAATTATTGGGCTGGAGGGCGGGCGGGTGAGGAGTGGTCTCGGAGGACAATAAACCTCTC
TCGGGCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGACCCGGCGAGAGGCGGCGGCGGGAGCGGCGGTGATGGACGGGTCCGGGGAGCAAC
CCAGAGGCGGGGGGCCCACCAGCTCTGAGCAGATCATGAAGACAGGGGCCCTTTTGCTTC
AGGGTTTCATCCAGGATCGAGCAGGGCGAATGGGGGGAGAGACACCTGAGCTGGGCCTGG
AGCAGGTGCCTCAGGATGCATCTACCAAGAAGTTGAGCGAGTGTCTCAAGCGCATTGGAG
ATGAACTGGACAGTAACATGGAGCTGCAGAGGATGATCGCAGCCGTGGACACGGACTCCC
CCCGAGAAGTCTTTTTCCGAGTGGCGGCCGAAATGTTTGCTGACGGCAACTTCAACTGGG
GCCGGGTGGTCGCGCTTTTCTACTTTGCCAGTAAACTGGTGCTCAAGGCCCTGTGCACCA
GGGTGCCCGAACTGATCAGGACCATCATGGGCTGGACGCTGGACTTCCTTCGAGATCGGC
TGCTGGGCTGGATCCAGGACCAGGGTGGTTGGGACGGCCTCCTCTCCTACTTTGGGACGC
CCACGTGGCAGACGGTGACCATCTTCGTGGCCGGAGTGCTCACCGCCTCGCTCACCATCT
GGAAGAAGATGGGCTGAGGCCGCCAGCCGCCTTGGACTGTGTCTTTTCTGCATAAATTAT
GGAATTTTTCCAGCGGGGTGGGGGGGTCGGGGGGCCACGGGGGCATTTTTCTTACTTTTG
TAATTATTGGGCTGGAGGGCGGGCGGGTGAGGAGTGGTCTCGGAGGACAATAAACCTCTC
TCGGGCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|5915766|sp|O02703|BAXA_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5915766|sp|O02703|BAXA_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               512-630, - strand, RNAz p=0.5933

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               512-630, - strand, RNAz p=0.5933

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               124-272, gnl|bosTau2|chr18 (48125821-48125969)
               

               
               124-272, gnl|Hg17|chr19 (54150755-54150903)
               

               
               124-272, gnl|Mm7|chr7 (41641852-41641704)
               


               
               512-790, gnl|bosTau2|chr18 (48128963-48129237)
               

               
               512-790, gnl|Hg17|chr19 (54156600-54156867)
               

               
               512-790, gnl|Mm7|chr7 (41637695-41637435)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-272, gnl|bosTau2|chr18 (48125821-48125969)
               

               
               124-272, gnl|Hg17|chr19 (54150755-54150903)
               

               
               124-272, gnl|Mm7|chr7 (41641852-41641704)
               


               
               512-790, gnl|bosTau2|chr18 (48128963-48129237)
               

               
               512-790, gnl|Hg17|chr19 (54156600-54156867)
               

               
               512-790, gnl|Mm7|chr7 (41637695-41637435)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ill (0.351185)
               

               
               jca (0.34188)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               jca (0.34188)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	124-272, gnl\|bosTau2\|chr18 (48125821-48125969)
	124-272, gnl\|Hg17\|chr19 (54150755-54150903)
	124-272, gnl\|Mm7\|chr7 (41641852-41641704)

	512-790, gnl\|bosTau2\|chr18 (48128963-48129237)
	512-790, gnl\|Hg17\|chr19 (54156600-54156867)
	512-790, gnl\|Mm7\|chr7 (41637695-41637435)

	ill (0.351185)
	jca (0.34188)
	ece (0.229305)
	fli (0.202881)
	ese (0.126502)
	pgl (0.118483)
	jej (0.0989218)