Ss1.1-rfli712b_e24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTTCAAGGAGCTCACCCCTAACTACAATCCCGATATCATCTTCAAGGACGAGGAGAAC ACCGGCGCCGACCGCCTCATGACCCAGCGCTGCAAGGACCGCCTGAACTCGCTGGCCATC TCGGTGATGAACCAGTGGCCTGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGAC GGTCACCACTCGGAGGAATCGCTGCATTATGAAGGCCGCGCGGTGGACATCACCACGTCG GATCGCGACCGGAACAAGTACGGACTGCTGGCGCGCCTGGCGGTGGAGGCCGGCTTCGAC TGGGTGTATTACGAGTCCAAGGCCCACGTGCATTGCTCCGTCAAGTCCGAGCACTCGGCC GCGGCTAAGACAGGTGGCTGCTTCCCTGCCGGAGCCCAGGTGCGCCTGGAGAGTGGGGCA CGTGTGGCCTTGTCAGCCGTGAGGCCAGGAGACCGAGTGCTGGCTATGGGGGAGGACGGG AACCCCACCTTCAGCGACGTGCTCATTTTCCTCGATCGTGAGCCAGACAGGCTGAGGGCC TTTCAGGTCATCGAGACCCAAGACCCCCCGCGCCGCCTGGCCCTCACCCCTGCCCACCTG CTCTTCACAGCCAACAATCACACAGAACCAGCTGCCCGCTTCCGGGCCACGTTTGCCAGC CAGGTGCAGCCTGGCCAGTATGTGCTGGTGGCTGGAGTGCCAGGCCTGCAGCCGGCCCGA GTGGCAGCGGTTTCCACACACGTGGCCCTTGGGGCATACGCTCCCTTAACGAGGCATGGG ACGCTGGTGGTGGAGGATGTGGTGGCCTCCTGCTTCGCGGCCGTGGCTGACCATCATCTG GCTCAATTGGCCTTCTGGCCCCTGCGACTGTTTCACAGCTTGGCGTGGGGCAGCTGGACC CCTGGGGAGGGTGTGCACTGGTACCCCCAGCTGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTTCAAGGAGCTCACCCCTAACTACAATCCCGATATCATCTTCAAGGACGAGGAGAAC ACCGGCGCCGACCGCCTCATGACCCAGCGCTGCAAGGACCGCCTGAACTCGCTGGCCATC TCGGTGATGAACCAGTGGCCTGGGGTGAAGCTGCGGGTGACCGAGGGCTGGGACGAGGAC GGTCACCACTCGGAGGAATCGCTGCATTATGAAGGCCGCGCGGTGGACATCACCACGTCG GATCGCGACCGGAACAAGTACGGACTGCTGGCGCGCCTGGCGGTGGAGGCCGGCTTCGAC TGGGTGTATTACGAGTCCAAGGCCCACGTGCATTGCTCCGTCAAGTCCGAGCACTCGGCC GCGGCTAAGACAGGTGGCTGCTTCCCTGCCGGAGCCCAGGTGCGCCTGGAGAGTGGGGCA CGTGTGGCCTTGTCAGCCGTGAGGCCAGGAGACCGAGTGCTGGCTATGGGGGAGGACGGG AACCCCACCTTCAGCGACGTGCTCATTTTCCTCGATCGTGAGCCAGACAGGCTGAGGGCC TTTCAGGTCATCGAGACCCAAGACCCCCCGCGCCGCCTGGCCCTCACCCCTGCCCACCTG CTCTTCACAGCCAACAATCACACAGAACCAGCTGCCCGCTTCCGGGCCACGTTTGCCAGC CAGGTGCAGCCTGGCCAGTATGTGCTGGTGGCTGGAGTGCCAGGCCTGCAGCCGGCCCGA GTGGCAGCGGTTTCCACACACGTGGCCCTTGGGGCATACGCTCCCTTAACGAGGCATGGG ACGCTGGTGGTGGAGGATGTGGTGGCCTCCTGCTTCGCGGCCGTGGCTGACCATCATCTG GCTCAATTGGCCTTCTGGCCCCTGCGACTGTTTCACAGCTTGGCGTGGGGCAGCTGGACC CCTGGGGAGGGTGTGCACTGGTACCCCCAGCTGCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 509-936, - strand, RNAz p=0.777441 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 509-936, - strand, RNAz p=0.777441 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 84-344, gnl|bosTau2|chr5 (22371682-22371942) | |
| 84-344, gnl|canFam2|chr27 (8503587-8503320) | |
| 84-344, gnl|danRer3|chr23 (39847102-39846835) | |
| 84-344, gnl|dasNov1|scaffold_12464 (64973-64706) | |
| 84-344, gnl|echTel1|scaffold_315380 (4703-4436) | |
| 84-344, gnl|fr1|chrUn (40981575-40981841) | |
| 84-344, gnl|galGal2|chr7 (23077594-23077327) | |
| 84-344, gnl|hg17|chr12 (47771176-47771443) | |
| 84-344, gnl|Hg17|chr12 (47771443-47771183) | |
| 84-344, gnl|loxAfr1|scaffold_2320 (69058-69325) | |
| 84-344, gnl|mm7|chr15 (98880069-98880336) | |
| 84-344, gnl|Mm7|chr15 (98880336-98880076) | |
| 84-344, gnl|monDom2|scaffold_39 (1546970-1546703) | |
| 84-344, gnl|oryCun1|scaffold_215418 (9299-9032) | |
| 84-344, gnl|panTro1|chr10 (48946154-48946421) | |
| 84-344, gnl|rheMac2|chr11 (46219243-46219510) | |
| 84-344, gnl|rn3|chr7 (137745305-137745572) | |
| 84-344, gnl|tetNig1|chr9 (3909467-3909733) | |
| 84-344, gnl|xenTro1|scaffold_133 (1706417-1706684) | |
| 349-936, gnl|bosTau2|chr2 (64995481-64994894) | |
| 349-936, gnl|Hg17|chr2 (219746093-219745506) | |
| 349-936, gnl|Mm7|chr1 (75186428-75185841) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 84-344, gnl|bosTau2|chr5 (22371682-22371942) | |
| 84-344, gnl|canFam2|chr27 (8503587-8503320) | |
| 84-344, gnl|danRer3|chr23 (39847102-39846835) | |
| 84-344, gnl|dasNov1|scaffold_12464 (64973-64706) | |
| 84-344, gnl|echTel1|scaffold_315380 (4703-4436) | |
| 84-344, gnl|fr1|chrUn (40981575-40981841) | |
| 84-344, gnl|galGal2|chr7 (23077594-23077327) | |
| 84-344, gnl|hg17|chr12 (47771176-47771443) | |
| 84-344, gnl|Hg17|chr12 (47771443-47771183) | |
| 84-344, gnl|loxAfr1|scaffold_2320 (69058-69325) | |
| 84-344, gnl|mm7|chr15 (98880069-98880336) | |
| 84-344, gnl|Mm7|chr15 (98880336-98880076) | |
| 84-344, gnl|monDom2|scaffold_39 (1546970-1546703) | |
| 84-344, gnl|oryCun1|scaffold_215418 (9299-9032) | |
| 84-344, gnl|panTro1|chr10 (48946154-48946421) | |
| 84-344, gnl|rheMac2|chr11 (46219243-46219510) | |
| 84-344, gnl|rn3|chr7 (137745305-137745572) | |
| 84-344, gnl|tetNig1|chr9 (3909467-3909733) | |
| 84-344, gnl|xenTro1|scaffold_133 (1706417-1706684) | |
| 349-936, gnl|bosTau2|chr2 (64995481-64994894) | |
| 349-936, gnl|Hg17|chr2 (219746093-219745506) | |
| 349-936, gnl|Mm7|chr1 (75186428-75185841) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.608643) | |
| eje (0.0988338) |