Non-Coding RNA Search

Ss1.1-rfli716b_e10.5

Sequence:


               
               CGGCTCGCGCAGCTCGTTGGCTCACTATATAAAGGGAGAAGCGGGCGGACCGGACGGCTG
GAGCTGCAGCCGGTGGCGGCAGCGGCGGCGCGGGGAGCGGCGACCAGTGGTGGTTTCCCT
CCTTGGCGCGGGGTGGGGAGCGGGCAACGCCCCCCAAACCCCAGAAGGGTCGTGCCCTTT
TTTTTTTTAAGGGCGATCCTCGAGTTTTTAGCTCCGGGAGGACTGCCCCCTCCTCTTCCT
CCCCTCGCCGATCCCCTCTAATCCAGCAGGATCCGATTTTGTTTAAAATTCCCCCCCCAA
TTTTGCGGTGGCTTGGGTCACCCTCTGGGTGTTTTTTTTTTTTTTTTTCGTTTTGTTTTT
ATCTTGTTTTCTCGGGGCTTGCCCCCCTCTTGTTTGTGTTGTGTGTGGAAATGGCGAACT
CGGCAAATACAAACACCGTGCCTAAATTATACAGATCTGTGATCGAAGATGTTATTAATG
ATGTGAGAGACATCTTTTTGGATGATGGAGTCGATGAACAAGTTCTGATGGAACTAAAAA
CTTTATGGGAGAATAAACTAATGCAGTCTAGGGCAGTAGATGGATTTCATTCAGAAGAGC
AGCAGCTCTTATTGCAAGTTCAACAGCAACATCAACCTCAGCAGCAGCAGCATCACCACC
ACCACCACCATCAGCAAGCTCAGCCACAACAGACAGTACCTCAGCAAGCACAGACCCAGC
AGGTCCTTATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTCGCGCAGCTCGTTGGCTCACTATATAAAGGGAGAAGCGGGCGGACCGGACGGCTG
GAGCTGCAGCCGGTGGCGGCAGCGGCGGCGCGGGGAGCGGCGACCAGTGGTGGTTTCCCT
CCTTGGCGCGGGGTGGGGAGCGGGCAACGCCCCCCAAACCCCAGAAGGGTCGTGCCCTTT
TTTTTTTTAAGGGCGATCCTCGAGTTTTTAGCTCCGGGAGGACTGCCCCCTCCTCTTCCT
CCCCTCGCCGATCCCCTCTAATCCAGCAGGATCCGATTTTGTTTAAAATTCCCCCCCCAA
TTTTGCGGTGGCTTGGGTCACCCTCTGGGTGTTTTTTTTTTTTTTTTTCGTTTTGTTTTT
ATCTTGTTTTCTCGGGGCTTGCCCCCCTCTTGTTTGTGTTGTGTGTGGAAATGGCGAACT
CGGCAAATACAAACACCGTGCCTAAATTATACAGATCTGTGATCGAAGATGTTATTAATG
ATGTGAGAGACATCTTTTTGGATGATGGAGTCGATGAACAAGTTCTGATGGAACTAAAAA
CTTTATGGGAGAATAAACTAATGCAGTCTAGGGCAGTAGATGGATTTCATTCAGAAGAGC
AGCAGCTCTTATTGCAAGTTCAACAGCAACATCAACCTCAGCAGCAGCAGCATCACCACC
ACCACCACCATCAGCAAGCTCAGCCACAACAGACAGTACCTCAGCAAGCACAGACCCAGC
AGGTCCTTATTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38492543|pdb|1NVP|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38492543|pdb|1NVP|B

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               440-542, gnl|bosTau2|chr10 (64248849-64248747)
               

               
               440-542, gnl|Hg17|chr14 (80752612-80752510)
               

               
               440-542, gnl|Mm7|chr12 (89068029-89067927)
               


               
               543-732, gnl|bosTau2|chr10 (64241089-64240900)
               

               
               543-732, gnl|Hg17|chr14 (80740201-80740012)
               

               
               543-732, gnl|Mm7|chr12 (89056920-89056728)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               440-542, gnl|bosTau2|chr10 (64248849-64248747)
               

               
               440-542, gnl|Hg17|chr14 (80752612-80752510)
               

               
               440-542, gnl|Mm7|chr12 (89068029-89067927)
               


               
               543-732, gnl|bosTau2|chr10 (64241089-64240900)
               

               
               543-732, gnl|Hg17|chr14 (80740201-80740012)
               

               
               543-732, gnl|Mm7|chr12 (89056920-89056728)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fli (0.202881)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               jej (0.0989218)

	440-542, gnl\|bosTau2\|chr10 (64248849-64248747)
	440-542, gnl\|Hg17\|chr14 (80752612-80752510)
	440-542, gnl\|Mm7\|chr12 (89068029-89067927)

	543-732, gnl\|bosTau2\|chr10 (64241089-64240900)
	543-732, gnl\|Hg17\|chr14 (80740201-80740012)
	543-732, gnl\|Mm7\|chr12 (89056920-89056728)