Non-Coding RNA Search

Ss1.1-rfli717b_h20.5.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTGCTGTGAAGCTTGATGAATCTTTATTAAGCAGGG
GCCCACCAAGAGGGCAGCTAAGGCTGGGGGAGGCGGGGGAGTTGGGCAGGAACGGGGCCC
CGAAGGGGGTGCCCGGATGAGAGGGCACTCACTGATTATCACTGGGCGCAGAGGTGGAGG
AGCTGATGCTCACGGCCGACTGCATCCTCTCCACCAGCCCGGCCCACTGGCGCCGCATGT
CTTCCACCAGAGGCTCGAACCAGCCTTTGAGGCGGGCCTGGAAGGCCTCGGCCTGCAGGC
GCAACTGGCTGCCCTGCTCCTCCACTTTGGTGCGCACCTCCTCCAGCTGCTCACGCATCT
CATCCAGGCGGTCGCGGGTCCGGCTGCCCATCTCCTCCAGCCGTCCGCGCAGCTTCTGGC
CCCAGGCTTCGGCGCGCTCGCGCAGCGGCTGGCCGGCCCTGGTACTCAGGGTGGCGGCGC
GCAATCGGCCCTGCTCCACCAGGGGCCCGAGGCGCTCGCGGAGGGCGCTCACGCTGCGCT
CGGCGCCCTCGCGCAGCCCCGCCTGGTACACGGCCAGGCGCTTCTGCAGGTCCTCGGTGT
CGCGGAGCAGCCGCTTGCGCAGCTTGCGCAGGTGGGAAGCCAGGCGGCTCCGCAGCTCCT
CGGTGGTCTGGCCCAACATGTTGTGCACCTCGCTGCGGTAGAGCACCAAGCGGTTGCGCA
CGTCCTCCATGTCGGCGCCCACGCGGGCCTGCGCCGCCTGCAGCTCCTTGGACAGGCGCG
CCTGCGTCTCCTGGGTCACGGGGCCCAGCTGCGCCTCCAGCTCCTCGCGGTAGGCCTTCA
CCTCCTTCATGCTCTCCTCTATCAGCTCCGTCAGTTCCTGGGTGACCTTGGTGCTGAGCA
GCTCCTCCTGCACTTGGTCAGACAGGGACTGCACCCAGCGCAGGTAATCCCAGAAGCGGC
CCAGGGCCTGCTCCCAGGGCTGGCTGCCCTGCCACTTGGGCTCCTCCCACCACACGTGCA
CCTCCGGCGGCGGCCCCGGCTCATCCTCTGTCCGGCATCCTGCGAGGAGGGTTACCACCA
AAGCAACCCACAGAACCCTCATCTTCTGGCTTGCGATTGGCCAACCGGTTGCTTCCTCCT
CCTCCTTCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTGCTGTGAAGCTTGATGAATCTTTATTAAGCAGGG
GCCCACCAAGAGGGCAGCTAAGGCTGGGGGAGGCGGGGGAGTTGGGCAGGAACGGGGCCC
CGAAGGGGGTGCCCGGATGAGAGGGCACTCACTGATTATCACTGGGCGCAGAGGTGGAGG
AGCTGATGCTCACGGCCGACTGCATCCTCTCCACCAGCCCGGCCCACTGGCGCCGCATGT
CTTCCACCAGAGGCTCGAACCAGCCTTTGAGGCGGGCCTGGAAGGCCTCGGCCTGCAGGC
GCAACTGGCTGCCCTGCTCCTCCACTTTGGTGCGCACCTCCTCCAGCTGCTCACGCATCT
CATCCAGGCGGTCGCGGGTCCGGCTGCCCATCTCCTCCAGCCGTCCGCGCAGCTTCTGGC
CCCAGGCTTCGGCGCGCTCGCGCAGCGGCTGGCCGGCCCTGGTACTCAGGGTGGCGGCGC
GCAATCGGCCCTGCTCCACCAGGGGCCCGAGGCGCTCGCGGAGGGCGCTCACGCTGCGCT
CGGCGCCCTCGCGCAGCCCCGCCTGGTACACGGCCAGGCGCTTCTGCAGGTCCTCGGTGT
CGCGGAGCAGCCGCTTGCGCAGCTTGCGCAGGTGGGAAGCCAGGCGGCTCCGCAGCTCCT
CGGTGGTCTGGCCCAACATGTTGTGCACCTCGCTGCGGTAGAGCACCAAGCGGTTGCGCA
CGTCCTCCATGTCGGCGCCCACGCGGGCCTGCGCCGCCTGCAGCTCCTTGGACAGGCGCG
CCTGCGTCTCCTGGGTCACGGGGCCCAGCTGCGCCTCCAGCTCCTCGCGGTAGGCCTTCA
CCTCCTTCATGCTCTCCTCTATCAGCTCCGTCAGTTCCTGGGTGACCTTGGTGCTGAGCA
GCTCCTCCTGCACTTGGTCAGACAGGGACTGCACCCAGCGCAGGTAATCCCAGAAGCGGC
CCAGGGCCTGCTCCCAGGGCTGGCTGCCCTGCCACTTGGGCTCCTCCCACCACACGTGCA
CCTCCGGCGGCGGCCCCGGCTCATCCTCTGTCCGGCATCCTGCGAGGAGGGTTACCACCA
AAGCAACCCACAGAACCCTCATCTTCTGGCTTGCGATTGGCCAACCGGTTGCTTCCTCCT
CCTCCTTCCTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               APOE_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               APOE_PIG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               26-869, gnl|bosTau2|chr18 (38874642-38875500)
               

               
               26-869, gnl|Hg17|chr19 (50104490-50103630)
               

               
               26-869, gnl|Mm7|chr7 (17378646-17379477)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-869, gnl|bosTau2|chr18 (38874642-38875500)
               

               
               26-869, gnl|Hg17|chr19 (50104490-50103630)
               

               
               26-869, gnl|Mm7|chr7 (17378646-17379477)

Expressed library(ies): 40 entry(ies)

More info

Expressed library(ies): 40 entry(ies)

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               cli (13.1418)
               

               
               amn (4.59482)
               

               
               clu (3.94831)
               

               
               hyp (3.42808)
               

               
               fce (2.44432)
               

               
               fli (2.23169)
               

               
               fhi (2.20451)
               

               
               lnt (1.7077)
               

               
               cag (1.66314)
               

               
               fbs (1.22742)
               

               
               cly (1.20642)
               

               
               ute (1.19506)
               

               
               ebs (1.18301)
               

               
               med (1.16252)
               

               
               eru (0.960384)
               

               
               jca (0.683761)
               

               
               mcp (0.682594)
               

               
               eep (0.61282)
               

               
               eli (0.607257)
               

               
               nep (0.551775)
               

               
               ill (0.526778)
               

               
               eye (0.511509)
               

               
               nje (0.49776)
               

               
               cty (0.41632)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               cbr (0.383926)
               

               
               nco (0.323468)
               

               
               nca (0.273748)
               

               
               cov (0.264306)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (13.1418)
               

               
               amn (4.59482)
               

               
               clu (3.94831)
               

               
               hyp (3.42808)
               

               
               fce (2.44432)
               

               
               fli (2.23169)
               

               
               fhi (2.20451)
               

               
               lnt (1.7077)
               

               
               cag (1.66314)
               

               
               fbs (1.22742)
               

               
               cly (1.20642)
               

               
               ute (1.19506)
               

               
               ebs (1.18301)
               

               
               med (1.16252)
               

               
               eru (0.960384)
               

               
               jca (0.683761)
               

               
               mcp (0.682594)
               

               
               eep (0.61282)
               

               
               eli (0.607257)
               

               
               nep (0.551775)
               

               
               ill (0.526778)
               

               
               eye (0.511509)
               

               
               nje (0.49776)
               

               
               cty (0.41632)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               cbr (0.383926)
               

               
               nco (0.323468)
               

               
               nca (0.273748)
               

               
               cov (0.264306)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	26-869, gnl\|bosTau2\|chr18 (38874642-38875500)
	26-869, gnl\|Hg17\|chr19 (50104490-50103630)
	26-869, gnl\|Mm7\|chr7 (17378646-17379477)

	cli (13.1418)
	amn (4.59482)
	clu (3.94831)
	hyp (3.42808)
	fce (2.44432)
	fli (2.23169)
	fhi (2.20451)
	lnt (1.7077)
	cag (1.66314)
	fbs (1.22742)
	cly (1.20642)
	ute (1.19506)
	ebs (1.18301)
	med (1.16252)
	eru (0.960384)
	jca (0.683761)
	mcp (0.682594)
	eep (0.61282)
	eli (0.607257)
	nep (0.551775)
	ill (0.526778)
	eye (0.511509)
	nje (0.49776)
	cty (0.41632)
	fcc (0.39557)
	eje (0.395335)
	col (0.390016)
	elu (0.385356)
	cbr (0.383926)
	nco (0.323468)
	nca (0.273748)
	cov (0.264306)
	ece (0.229305)
	jej (0.197844)
	csp (0.161186)
	lun (0.150489)
	ese (0.126502)
	pgl (0.118483)
	ecc (0.115035)
	nbm (0.0993246)