Non-Coding RNA Search

Ss1.1-rfli721b_a5.5

Sequence:


               
               CGGCTGCCCTGGGCACGGCTTCTCATGTTGGTGCTGGTCTTTGCCGTAGGTTTCCTGTGC
CATGACTTGCGGTCACACAGTTCTTTCCAGGCCTCCCTCTCTGGCCGGTTGCTTCAGTCA
TCTGGTTTCTTGCCCGCTGGCCAGCAAGCATGTACCAAGATCTACTCCTACAGCCTGCAG
GGCTACAGCTGGTTACAGGAGAGCTTGCCGGCCTGGGGTTCCCACCTGCTGACCACGGCG
AGGCCCAGCCTGCAGCTGGCCTGGGCCCACACCAATGCCACGGTCCGCTTCCTTTCTGCC
CACTGTGCCTCCCACCTTGCCTGGCTCGGTGACAGCCTCACCAGCCTCTCCCAGAGGATC
CAGCTCCCTGATGCCCTGAACCAGCTGCTCCATTCTCTGAGGGAGCTGCTCCTGTTTCTT
TACCAGAACGTCCTACTTCCCATGTGGCACCTGCTGCTTGAGGCCCTGGCCCGCGCCCAG
GAGCACTGCCACGAGGCATGCAGAGGTGAGGTGACCTGGGACTGCGTGAAGACACAGCTC
AGCAAGGCTGCCCACTGGACCTGGCTCTGCCTACAGGACGTCACAGTGGCTTTCTTGGAC
TGGGCACTTGCCATGATATCCCAGCAGTAGGCCCTGCCTCCCTGGCCACTGGGTTCTGTC
AGGAGCAGACTGTCTGAGACTCTGGGAGTAGAAGTGGCACTTTTCGTGGGAGTCTTTGTT
CCTTGGTGCCTGAGTTCTGTCTTCTAGGCAAGTGGCTGGCTGCCTCTGCCTCAGTTCTTC
CAGCTCTGGTGGCAGCTGATCCCAGAGGTCTCTCAACCTCCTACCCACGATTCCACTGAC
CACTGCCCTGCCCTGTTGCACAAAACTCCCAGCCTCTGCCCTTGGGAGGCTGGGAGCCTC
TCTCGCCTCCTCTCTTGTCTCCTGCTCTCCACTTCCTTCTCTCTCATTCCCAAAGCCTCA
AACAGCTCATCTCCAAAGAGGTGGGACTCCAGCCAGTGGCTTCTGCATTCTTCTGAAGAA
TGATTCCTGCTTCCAGGCTTTGGTCACAGAAGAAAAAAGAAAGGGACCTCCAGAAGAATC
CAGAAGAACATGGCAGCACAGTGGGTGGTAGCAGCATCACCTCTACCCACAGTCTGAGTG
TGGCTGTCTGTGCGGATGGAGGCCTGAGTGGACAGGCCTCTCACCTCAAAATGCTCAACT
TAGGTTCTTCAAGGCCCCTCGCTGCCCCTTCCATCTGGGTCCTGCTTCCTCACTCTCCAT
TACCCTTCAGCGCTGGGGGTCTCCGCCCTAGTGTTCAGCCTCTGCTGCCAACCCCTACCA
TCTGTCTGGAGAGCAGAGCCCAGGTAGTCCTGTGCCCCCAGCCTAGGGAACCTTCCAGCA
GCCTGTTGAGACAGGATGTAGCATGTGGCCCGTGGGTATGCCTGCTCGGTGGAATAAAGG
AAGGACGCAGACAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTGCCCTGGGCACGGCTTCTCATGTTGGTGCTGGTCTTTGCCGTAGGTTTCCTGTGC
CATGACTTGCGGTCACACAGTTCTTTCCAGGCCTCCCTCTCTGGCCGGTTGCTTCAGTCA
TCTGGTTTCTTGCCCGCTGGCCAGCAAGCATGTACCAAGATCTACTCCTACAGCCTGCAG
GGCTACAGCTGGTTACAGGAGAGCTTGCCGGCCTGGGGTTCCCACCTGCTGACCACGGCG
AGGCCCAGCCTGCAGCTGGCCTGGGCCCACACCAATGCCACGGTCCGCTTCCTTTCTGCC
CACTGTGCCTCCCACCTTGCCTGGCTCGGTGACAGCCTCACCAGCCTCTCCCAGAGGATC
CAGCTCCCTGATGCCCTGAACCAGCTGCTCCATTCTCTGAGGGAGCTGCTCCTGTTTCTT
TACCAGAACGTCCTACTTCCCATGTGGCACCTGCTGCTTGAGGCCCTGGCCCGCGCCCAG
GAGCACTGCCACGAGGCATGCAGAGGTGAGGTGACCTGGGACTGCGTGAAGACACAGCTC
AGCAAGGCTGCCCACTGGACCTGGCTCTGCCTACAGGACGTCACAGTGGCTTTCTTGGAC
TGGGCACTTGCCATGATATCCCAGCAGTAGGCCCTGCCTCCCTGGCCACTGGGTTCTGTC
AGGAGCAGACTGTCTGAGACTCTGGGAGTAGAAGTGGCACTTTTCGTGGGAGTCTTTGTT
CCTTGGTGCCTGAGTTCTGTCTTCTAGGCAAGTGGCTGGCTGCCTCTGCCTCAGTTCTTC
CAGCTCTGGTGGCAGCTGATCCCAGAGGTCTCTCAACCTCCTACCCACGATTCCACTGAC
CACTGCCCTGCCCTGTTGCACAAAACTCCCAGCCTCTGCCCTTGGGAGGCTGGGAGCCTC
TCTCGCCTCCTCTCTTGTCTCCTGCTCTCCACTTCCTTCTCTCTCATTCCCAAAGCCTCA
AACAGCTCATCTCCAAAGAGGTGGGACTCCAGCCAGTGGCTTCTGCATTCTTCTGAAGAA
TGATTCCTGCTTCCAGGCTTTGGTCACAGAAGAAAAAAGAAAGGGACCTCCAGAAGAATC
CAGAAGAACATGGCAGCACAGTGGGTGGTAGCAGCATCACCTCTACCCACAGTCTGAGTG
TGGCTGTCTGTGCGGATGGAGGCCTGAGTGGACAGGCCTCTCACCTCAAAATGCTCAACT
TAGGTTCTTCAAGGCCCCTCGCTGCCCCTTCCATCTGGGTCCTGCTTCCTCACTCTCCAT
TACCCTTCAGCGCTGGGGGTCTCCGCCCTAGTGTTCAGCCTCTGCTGCCAACCCCTACCA
TCTGTCTGGAGAGCAGAGCCCAGGTAGTCCTGTGCCCCCAGCCTAGGGAACCTTCCAGCA
GCCTGTTGAGACAGGATGTAGCATGTGGCCCGTGGGTATGCCTGCTCGGTGGAATAAAGG
AAGGACGCAGACAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18027314|gb|AAL55739.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18027314|gb|AAL55739.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               856-971, - strand, RNAz p=0.993992
               

               
               1074-1186, + strand, RNAz p=0.579559

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               856-971, - strand, RNAz p=0.993992
               

               
               1074-1186, + strand, RNAz p=0.579559

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_017727, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017727, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               183-357, gnl|bosTau2|chr11 (55418222-55418396)
               

               
               183-357, gnl|Hg17|chr2 (27174545-27174717)
               

               
               183-357, gnl|Mm7|chr5 (29908557-29908731)
               


               
               501-1441, gnl|bosTau2|chr11 (55418890-55419822)
               

               
               501-1441, gnl|Hg17|chr2 (27175227-27176196)
               

               
               501-1441, gnl|Mm7|chr5 (29909177-29909968)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-357, gnl|bosTau2|chr11 (55418222-55418396)
               

               
               183-357, gnl|Hg17|chr2 (27174545-27174717)
               

               
               183-357, gnl|Mm7|chr5 (29908557-29908731)
               


               
               501-1441, gnl|bosTau2|chr11 (55418890-55419822)
               

               
               501-1441, gnl|Hg17|chr2 (27175227-27176196)
               

               
               501-1441, gnl|Mm7|chr5 (29909177-29909968)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               csp (0.483559)
               

               
               pty (0.428143)
               

               
               ton (0.351)
               

               
               lnt (0.284616)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.483559)
               

               
               pty (0.428143)
               

               
               ton (0.351)
               

               
               lnt (0.284616)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	856-971, - strand, RNAz p=0.993992
	1074-1186, + strand, RNAz p=0.579559

	183-357, gnl\|bosTau2\|chr11 (55418222-55418396)
	183-357, gnl\|Hg17\|chr2 (27174545-27174717)
	183-357, gnl\|Mm7\|chr5 (29908557-29908731)

	501-1441, gnl\|bosTau2\|chr11 (55418890-55419822)
	501-1441, gnl\|Hg17\|chr2 (27175227-27176196)
	501-1441, gnl\|Mm7\|chr5 (29909177-29909968)

	csp (0.483559)
	pty (0.428143)
	ton (0.351)
	lnt (0.284616)
	cly (0.241284)
	ebs (0.236602)
	jca (0.22792)
	fli (0.202881)
	aor (0.195274)
	col (0.195008)
	nlu (0.191681)
	fty (0.17584)
	ill (0.175593)
	cli (0.152812)
	hyp (0.142837)
	cst (0.140036)
	nca (0.136874)
	cov (0.132153)
	eep (0.122564)
	med (0.116252)
	nbm (0.0993246)