Non-Coding RNA Search

Ss1.1-rfli722b_j20.5

Sequence:


               
               AGCGTGTACTACATGATCTGTTTGCCTGATTGCCTTCACAATCACTCTCATCCTGAATGT
CACTCGGCTGTGCATGATGAGCAGCCACCTTCGTAAAACCGAGAAAGCCATCAATGAATT
CTTCCGAACTGAAGGGGCAGAGAAGCTTCAGAAGGCCTTTGAGATCGCGAAACGCATCCC
CATCATCACCTCGGCTAAGACCCTGGAGCTGGCCAAAGTCACTCAGTTTAAAACCATGGA
GTTCGCCCGTTATATCGAGGAACTGGCGAGAAGTGTCCCTCTGCCACCCCTTATTCTGAA
CTGTCGGGCCTTCGTAGAGGAGATGTTTGAGGCTGTGCGAGTGGATGACCCTGATGACAT
GGGAGAAAGGATTAAAGAGAGACCCGCCTTGAACGCTCAAGATGGCATCTACGTCATTAA
CACAGAGATGGGCCGGAGTAGTTCACCAGGAGGCGATTCGGACGATGGTTCTCTGAGTGA
ACAAGGCCAGGAGATAGCAGTTCAGGTTTCTGTCCACCCTCAGTCAGAGACCAAGAGTAT
CGACACAGATTCTCAAGATAGCAGTCATTTCAGCCCGCCTGATGATACAGGATCTGCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGTGTACTACATGATCTGTTTGCCTGATTGCCTTCACAATCACTCTCATCCTGAATGT
CACTCGGCTGTGCATGATGAGCAGCCACCTTCGTAAAACCGAGAAAGCCATCAATGAATT
CTTCCGAACTGAAGGGGCAGAGAAGCTTCAGAAGGCCTTTGAGATCGCGAAACGCATCCC
CATCATCACCTCGGCTAAGACCCTGGAGCTGGCCAAAGTCACTCAGTTTAAAACCATGGA
GTTCGCCCGTTATATCGAGGAACTGGCGAGAAGTGTCCCTCTGCCACCCCTTATTCTGAA
CTGTCGGGCCTTCGTAGAGGAGATGTTTGAGGCTGTGCGAGTGGATGACCCTGATGACAT
GGGAGAAAGGATTAAAGAGAGACCCGCCTTGAACGCTCAAGATGGCATCTACGTCATTAA
CACAGAGATGGGCCGGAGTAGTTCACCAGGAGGCGATTCGGACGATGGTTCTCTGAGTGA
ACAAGGCCAGGAGATAGCAGTTCAGGTTTCTGTCCACCCTCAGTCAGAGACCAAGAGTAT
CGACACAGATTCTCAAGATAGCAGTCATTTCAGCCCGCCTGATGATACAGGATCTGCCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1363042|pir||B56745

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1363042|pir||B56745

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               360-479, + strand, RNAz p=0.705572

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-479, + strand, RNAz p=0.705572

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-595, gnl|bosTau2|chr7 (43980763-43981356)
               

               
               1-595, gnl|Hg17|chr5 (153412819-153413412)
               

               
               1-595, gnl|Mm7|chr11 (57611160-57611753)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-595, gnl|bosTau2|chr7 (43980763-43981356)
               

               
               1-595, gnl|Hg17|chr5 (153412819-153413412)
               

               
               1-595, gnl|Mm7|chr11 (57611160-57611753)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fli (0.202881)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               ese (0.126502)

	1-595, gnl\|bosTau2\|chr7 (43980763-43981356)
	1-595, gnl\|Hg17\|chr5 (153412819-153413412)
	1-595, gnl\|Mm7\|chr11 (57611160-57611753)