Ss1.1-rfli725b_m16.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAGAGCATCTGGGTTGATCCTGAAGCCTCCAGCCATTTGCCTGCCTACCTGCCAGGAC GTCTCTGAGGCAGCCATGAAGGTCCTCATCCTGTTCTTTTGCCTTGCTCAGCTCTGGGGC TGCCGTGCTGTCCCCCATGGCCCGATTCTGGGTTACAGGGAACCGGCCTGTGATGACGTA GAAACAGAGCAAGCAGCCCTGGCGGCCGTGGACTACATCAATAAGCACCTTCCTCGGGGC TACAAGCACACCTTGAACCAGGTTGACAGCGTGAAAGTGTGGCCAAGGCGGCCCGCGGGA GAGGTATTTGACATTGAAATAGACACGCTGGAAACCACCTGCCATGTCCTGGACCCCACT CCCCTGGCAAACTGCAGCGTGAGGCAGCTGACAGAGCATGCGGTGGAAGGAGACTGCGAT TTCCACGTGCTGAAACAGGACGGCCAGTTCTCCGTGTTATTTGCAAAATGTGATTCCAGT CCAGACTCAGCTGAGGATGTTCACAAGGTGTGTCCAAACTGCCCCCTGCTGGCCCCGCTT AATGACAGCCGGGTGGTGCACGCTGCAGAATCGGCGCTGGCTGCCTTCAACGCCCAGAGC AACGGCTCCTATTTGCAGCTTGTGGAAATTTCTCGGGCTCAACTTGTGCCTCTTTCAGCT TCTGTCTCTGTGGAGTTTGCAGTAGCTGTCACTGACTGTGTGGCTAAAGAGGTCATAGAC CCAACCAAATGCAACCTGCTGGTGGAAAAGCAATATGGCTTCTGTAAGGGGACAGTCACA GCGAAGGTTAATGAGGAAGATGTTGCGGTGACCTGCACGGTGTTCCAAACCCAGCCTGTG GTCCTGCAGCCCCAACCTGCCGGTGCTGATGCGGGGGCCACCCCTGTGGTGGATGCAGCT GCAACTGCATCTCCTCTAGCTGACGTGCCCGCAGCTTCCCTGGTGGTGGGACCCATGGTG GTGGCAGTTCCTCCGGGCATCCCGCCAGTGCACCGATCACACTACGACCTGCGCCACTCT TTCTCGGGTGTGGCCTCAGTGGAGTCAGCCTCCGGAGAAGCATTCCACGTGGGGAAAACA CCCAAGGGGGCACAGCCTAGCATTCCTGCTGCTGATGGCTCAGTTCCAGTGGTCCGCCCT TGCCCTGGGAGAATCAGACACTTCAAGATCTAGAAGATGGTCAGAGATGAGGTTTGGCAC AGAGAACATTGCCGCCATTGTCCAAGTATGGGTGTGGGTGGGGGCCTTGTCTGCTGTCAA AGCAAGTGCTGTGTGGTCTATCTTAATGTCAAGTCTTGTACCCTGACTTCTCATCCTTTA GAGGACAGAAGCAGGGGGGTACTAGTTATGTTTGATGGAAGGCATAAGGTCAGCAATTTG ATTCACTGTTTTGAGGCCAGGCCACCACCATTGTGTTCTCTGCCTTCTCTTGACCTCTCA AAAATAATTGGGACTGTGACTCTGAAAGGTGCTCTTGACAAGTTTATATCTGCTTATTAA TAAAAATGTCTGAAGACCATTACTTATAAAGAAAGTTCAACGCTGAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAGAGCATCTGGGTTGATCCTGAAGCCTCCAGCCATTTGCCTGCCTACCTGCCAGGAC GTCTCTGAGGCAGCCATGAAGGTCCTCATCCTGTTCTTTTGCCTTGCTCAGCTCTGGGGC TGCCGTGCTGTCCCCCATGGCCCGATTCTGGGTTACAGGGAACCGGCCTGTGATGACGTA GAAACAGAGCAAGCAGCCCTGGCGGCCGTGGACTACATCAATAAGCACCTTCCTCGGGGC TACAAGCACACCTTGAACCAGGTTGACAGCGTGAAAGTGTGGCCAAGGCGGCCCGCGGGA GAGGTATTTGACATTGAAATAGACACGCTGGAAACCACCTGCCATGTCCTGGACCCCACT CCCCTGGCAAACTGCAGCGTGAGGCAGCTGACAGAGCATGCGGTGGAAGGAGACTGCGAT TTCCACGTGCTGAAACAGGACGGCCAGTTCTCCGTGTTATTTGCAAAATGTGATTCCAGT CCAGACTCAGCTGAGGATGTTCACAAGGTGTGTCCAAACTGCCCCCTGCTGGCCCCGCTT AATGACAGCCGGGTGGTGCACGCTGCAGAATCGGCGCTGGCTGCCTTCAACGCCCAGAGC AACGGCTCCTATTTGCAGCTTGTGGAAATTTCTCGGGCTCAACTTGTGCCTCTTTCAGCT TCTGTCTCTGTGGAGTTTGCAGTAGCTGTCACTGACTGTGTGGCTAAAGAGGTCATAGAC CCAACCAAATGCAACCTGCTGGTGGAAAAGCAATATGGCTTCTGTAAGGGGACAGTCACA GCGAAGGTTAATGAGGAAGATGTTGCGGTGACCTGCACGGTGTTCCAAACCCAGCCTGTG GTCCTGCAGCCCCAACCTGCCGGTGCTGATGCGGGGGCCACCCCTGTGGTGGATGCAGCT GCAACTGCATCTCCTCTAGCTGACGTGCCCGCAGCTTCCCTGGTGGTGGGACCCATGGTG GTGGCAGTTCCTCCGGGCATCCCGCCAGTGCACCGATCACACTACGACCTGCGCCACTCT TTCTCGGGTGTGGCCTCAGTGGAGTCAGCCTCCGGAGAAGCATTCCACGTGGGGAAAACA CCCAAGGGGGCACAGCCTAGCATTCCTGCTGCTGATGGCTCAGTTCCAGTGGTCCGCCCT TGCCCTGGGAGAATCAGACACTTCAAGATCTAGAAGATGGTCAGAGATGAGGTTTGGCAC AGAGAACATTGCCGCCATTGTCCAAGTATGGGTGTGGGTGGGGGCCTTGTCTGCTGTCAA AGCAAGTGCTGTGTGGTCTATCTTAATGTCAAGTCTTGTACCCTGACTTCTCATCCTTTA GAGGACAGAAGCAGGGGGGTACTAGTTATGTTTGATGGAAGGCATAAGGTCAGCAATTTG ATTCACTGTTTTGAGGCCAGGCCACCACCATTGTGTTCTCTGCCTTCTCTTGACCTCTCA AAAATAATTGGGACTGTGACTCTGAAAGGTGCTCTTGACAAGTTTATATCTGCTTATTAA TAAAAATGTCTGAAGACCATTACTTATAAAGAAAGTTCAACGCTGAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 2-288, gnl|bosTau2|chr1 (50889863-50890149) | |
| 2-288, gnl|canFam2|chr34 (22229591-22229790) | |
| 2-288, gnl|echTel1|scaffold_192635 (10410-10211) | |
| 2-288, gnl|hg17|chr3 (187813540-187813738) | |
| 2-288, gnl|Hg17|chr3 (187813563-187813845) | |
| 2-288, gnl|loxAfr1|scaffold_73297 (4892-5089) | |
| 2-288, gnl|mm7|chr16 (22553428-22553616) | |
| 2-288, gnl|Mm7|chr16 (22553438-22553723) | |
| 2-288, gnl|monDom2|scaffold_69 (7437001-7436831) | |
| 2-288, gnl|oryCun1|scaffold_202439 (67653-67846) | |
| 2-288, gnl|panTro1|chr2 (191905905-191906103) | |
| 2-288, gnl|rheMac2|chr2 (100023915-100023717) | |
| 2-288, gnl|rn3|chr11 (80394259-80394071) | |
| 482-648, gnl|bosTau2|chr1 (50893067-50893233) | |
| 482-648, gnl|canFam2|chr34 (22233068-22233212) | |
| 482-648, gnl|dasNov1|scaffold_47274 (4906-5052) | |
| 482-648, gnl|echTel1|scaffold_192635 (7018-6874) | |
| 482-648, gnl|hg17|chr3 (187817675-187817819) | |
| 482-648, gnl|Hg17|chr3 (187817675-187817841) | |
| 482-648, gnl|loxAfr1|scaffold_100362 (1399-1543) | |
| 482-648, gnl|mm7|chr16 (22556706-22556850) | |
| 482-648, gnl|Mm7|chr16 (22556706-22556872) | |
| 482-648, gnl|monDom2|scaffold_69 (7431167-7431024) | |
| 482-648, gnl|oryCun1|scaffold_202439 (71329-71474) | |
| 482-648, gnl|panTro1|chr2 (191910041-191910185) | |
| 482-648, gnl|rheMac2|chr2 (100019781-100019637) | |
| 482-648, gnl|rn3|chr11 (80391335-80391191) | |
| 482-648, gnl|tetNig1|chr15 (3310298-3310160) | |
| 831-1508, gnl|bosTau2|chr1 (50896090-50896754) | |
| 831-1508, gnl|Hg17|chr3 (187821073-187821769) | |
| 831-1508, gnl|Mm7|chr16 (22560125-22560745) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-288, gnl|bosTau2|chr1 (50889863-50890149) | |
| 2-288, gnl|canFam2|chr34 (22229591-22229790) | |
| 2-288, gnl|echTel1|scaffold_192635 (10410-10211) | |
| 2-288, gnl|hg17|chr3 (187813540-187813738) | |
| 2-288, gnl|Hg17|chr3 (187813563-187813845) | |
| 2-288, gnl|loxAfr1|scaffold_73297 (4892-5089) | |
| 2-288, gnl|mm7|chr16 (22553428-22553616) | |
| 2-288, gnl|Mm7|chr16 (22553438-22553723) | |
| 2-288, gnl|monDom2|scaffold_69 (7437001-7436831) | |
| 2-288, gnl|oryCun1|scaffold_202439 (67653-67846) | |
| 2-288, gnl|panTro1|chr2 (191905905-191906103) | |
| 2-288, gnl|rheMac2|chr2 (100023915-100023717) | |
| 2-288, gnl|rn3|chr11 (80394259-80394071) | |
| 482-648, gnl|bosTau2|chr1 (50893067-50893233) | |
| 482-648, gnl|canFam2|chr34 (22233068-22233212) | |
| 482-648, gnl|dasNov1|scaffold_47274 (4906-5052) | |
| 482-648, gnl|echTel1|scaffold_192635 (7018-6874) | |
| 482-648, gnl|hg17|chr3 (187817675-187817819) | |
| 482-648, gnl|Hg17|chr3 (187817675-187817841) | |
| 482-648, gnl|loxAfr1|scaffold_100362 (1399-1543) | |
| 482-648, gnl|mm7|chr16 (22556706-22556850) | |
| 482-648, gnl|Mm7|chr16 (22556706-22556872) | |
| 482-648, gnl|monDom2|scaffold_69 (7431167-7431024) | |
| 482-648, gnl|oryCun1|scaffold_202439 (71329-71474) | |
| 482-648, gnl|panTro1|chr2 (191910041-191910185) | |
| 482-648, gnl|rheMac2|chr2 (100019781-100019637) | |
| 482-648, gnl|rn3|chr11 (80391335-80391191) | |
| 482-648, gnl|tetNig1|chr15 (3310298-3310160) | |
| 831-1508, gnl|bosTau2|chr1 (50896090-50896754) | |
| 831-1508, gnl|Hg17|chr3 (187821073-187821769) | |
| 831-1508, gnl|Mm7|chr16 (22560125-22560745) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fli (84.1956) | |
| eli (55.2604) | |
| cli (15.2812) | |
| elu (4.23892) | |
| lun (4.21369) | |
| pty (0.856287) | |
| ese (0.379507) | |
| fty (0.351679) | |
| ski (0.146735) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (84.1956) | |
| eli (55.2604) | |
| cli (15.2812) | |
| elu (4.23892) | |
| lun (4.21369) | |
| pty (0.856287) | |
| ese (0.379507) | |
| fty (0.351679) | |
| ski (0.146735) |