Non-Coding RNA Search

Ss1.1-rfli732b_g3.5

Sequence:


               
               GTTTCTGCCAGTTTCCAGAGGCATCAGCTCCAGCAGCTTGTGAGTGGGCACTGCCTCTGC
AGCAGTCCCTCCGTCCCTCAATCCTTTTTTTTTTTTGCTACCCCACAGTGCATGGAGTTC
CTGGGCCAGGGATTAGATCTGAGCTGCAGTTGCAACCTATACCACAGCTGCGGCAATGTC
GATCCTTAACCCACCGCGCCAGGCCAGGGATCGAACCTGCATCCTGGTACTGCAAAGACG
CTGCTGATTGCATTTTGCCACAGCAGGAACTCCCATCCCTTAGTCTTTAGGGCTGAAATC
CTACCATACTGGGGTGGCACTCTGGGAATAGGCATCTCAACATCTGTGCCATCCAGAGCC
TACAGTAGGGCAGAGGTCAGCATGCTCGTGAAGGGCGGGCTCAATGCTGCCCAGCACTGT
GCTGACATTGCCACCATCCAGCCCTGGCCACATGACAGCCCACAGCTGACTGGGCAGCAG
GCCTGGGTTGGCTGGCTCAGCTCCAGCCAAGGCTGTCCACATACCTTTCTCTGGACACCC
TATGGCTAATTTTGTTACAACTGCACAGCGGCTGCTGCAGTTTTGTATTAAACATTATGA
AGCAAACCCATCTGCTTCTTAACTGGTGGTTTTGGGGGAGAAGGACTCTATTTGCTACTG
CCCTCTGTCTGGCTCCAGCTCTCTGTCCTTGGAGAGTGGCTGGTTCAAGTTCTGCTCCTG
CCCTTCAGCCTACTCATTGCTTATTGGTGGGGCGGGCGGCGTGGCGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCTGCCAGTTTCCAGAGGCATCAGCTCCAGCAGCTTGTGAGTGGGCACTGCCTCTGC
AGCAGTCCCTCCGTCCCTCAATCCTTTTTTTTTTTTGCTACCCCACAGTGCATGGAGTTC
CTGGGCCAGGGATTAGATCTGAGCTGCAGTTGCAACCTATACCACAGCTGCGGCAATGTC
GATCCTTAACCCACCGCGCCAGGCCAGGGATCGAACCTGCATCCTGGTACTGCAAAGACG
CTGCTGATTGCATTTTGCCACAGCAGGAACTCCCATCCCTTAGTCTTTAGGGCTGAAATC
CTACCATACTGGGGTGGCACTCTGGGAATAGGCATCTCAACATCTGTGCCATCCAGAGCC
TACAGTAGGGCAGAGGTCAGCATGCTCGTGAAGGGCGGGCTCAATGCTGCCCAGCACTGT
GCTGACATTGCCACCATCCAGCCCTGGCCACATGACAGCCCACAGCTGACTGGGCAGCAG
GCCTGGGTTGGCTGGCTCAGCTCCAGCCAAGGCTGTCCACATACCTTTCTCTGGACACCC
TATGGCTAATTTTGTTACAACTGCACAGCGGCTGCTGCAGTTTTGTATTAAACATTATGA
AGCAAACCCATCTGCTTCTTAACTGGTGGTTTTGGGGGAGAAGGACTCTATTTGCTACTG
CCCTCTGTCTGGCTCCAGCTCTCTGTCCTTGGAGAGTGGCTGGTTCAAGTTCTGCTCCTG
CCCTTCAGCCTACTCATTGCTTATTGGTGGGGCGGGCGGCGTGGCGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               408-566, - strand, RNAz p=0.987284

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               408-566, - strand, RNAz p=0.987284

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               398-488, + strand, RNAmicro p=0.932649

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               398-488, + strand, RNAmicro p=0.932649

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               251-722, gnl|bosTau2|chr10 (23804221-23804690)
               

               
               251-722, gnl|Mm7|chr2 (118621868-118622302)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               251-722, gnl|bosTau2|chr10 (23804221-23804690)
               

               
               251-722, gnl|Mm7|chr2 (118621868-118622302)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cli (0.305623)
               

               
               fli (0.202881)
               

               
               fat (0.147427)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               fli (0.202881)
               

               
               fat (0.147427)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

	251-722, gnl\|bosTau2\|chr10 (23804221-23804690)
	251-722, gnl\|Mm7\|chr2 (118621868-118622302)

	cli (0.305623)
	fli (0.202881)
	fat (0.147427)
	cov (0.132153)
	cly (0.120642)