Non-Coding RNA Search

Ss1.1-rfli734b_l21.5

Sequence:


               
               GCGCGAGCGTGCTTTCCACCCGACCGCTCTCACACGCCGAGCCCCACTAGGGGCTGCCCA
GCGCCCCCAACCCGGCAAGAGGACCTGGGCCCAACACCCGTGCCAGCTGAGTGCACAGGA
GCCCCCAGGTTGTCCCTCCTGGACCCGGGAGCGGACCCTGGTTGCGGTGAAGCCAGACGG
GGTGCAGCGGCGGCTCGTCGGGGACGTGATCCAGCGCTTTGAGAGGAGGGGCTTCAAGCT
GGTGGGGATGAAGATGCTGCAGGTGCCAGAGAGCCTCCTTGCTGAGCACTACCACGAGCT
GCGGAGGAAGCCCTTCTACCCAGCCCTCATCAGCTACATGAGCTCCGGCCCAGTGGTGGC
CATGGTCTGGGAAGGTCCCAACGTGGTCTGCGCCTCGAGGGCCATGATAGGACACACCAA
CTCGGCCGAGGCTGCCCCTGGCACCATCCGCGGAGACTTCAGCATCCATATCAGCAGGAA
TGTCATCCACGCCAGTGACTCTGTGGAAGGGGCCCAGAGGGAGATCCAGCTGTGGTTCCA
GAGCAGTGAGCTGGTGGACTGGGCGGACGAAGGCCACCACGGCAGCGCCGGTCCAGCCTG
AGCCCTCAGGGTGCCCTCCGTGCCCCGGCATCCACTCCGGACCAACTACCTCTTCCAAGA
ACTTGAGCCCACACCACACTCTGCCCGAATGTCCCAGACCACCTGCTCGTCCACCTTGTG
CCCACCCCAGCCCACAGGGGTTGAAACCACCGACTTATGTGCCTTGCAGTATCCTAAGCC
AGCACACGACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCGAGCGTGCTTTCCACCCGACCGCTCTCACACGCCGAGCCCCACTAGGGGCTGCCCA
GCGCCCCCAACCCGGCAAGAGGACCTGGGCCCAACACCCGTGCCAGCTGAGTGCACAGGA
GCCCCCAGGTTGTCCCTCCTGGACCCGGGAGCGGACCCTGGTTGCGGTGAAGCCAGACGG
GGTGCAGCGGCGGCTCGTCGGGGACGTGATCCAGCGCTTTGAGAGGAGGGGCTTCAAGCT
GGTGGGGATGAAGATGCTGCAGGTGCCAGAGAGCCTCCTTGCTGAGCACTACCACGAGCT
GCGGAGGAAGCCCTTCTACCCAGCCCTCATCAGCTACATGAGCTCCGGCCCAGTGGTGGC
CATGGTCTGGGAAGGTCCCAACGTGGTCTGCGCCTCGAGGGCCATGATAGGACACACCAA
CTCGGCCGAGGCTGCCCCTGGCACCATCCGCGGAGACTTCAGCATCCATATCAGCAGGAA
TGTCATCCACGCCAGTGACTCTGTGGAAGGGGCCCAGAGGGAGATCCAGCTGTGGTTCCA
GAGCAGTGAGCTGGTGGACTGGGCGGACGAAGGCCACCACGGCAGCGCCGGTCCAGCCTG
AGCCCTCAGGGTGCCCTCCGTGCCCCGGCATCCACTCCGGACCAACTACCTCTTCCAAGA
ACTTGAGCCCACACCACACTCTGCCCGAATGTCCCAGACCACCTGCTCGTCCACCTTGTG
CCCACCCCAGCCCACAGGGGTTGAAACCACCGACTTATGTGCCTTGCAGTATCCTAAGCC
AGCACACGACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8569509|pdb|1EHW|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8569509|pdb|1EHW|B

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               7-147, gnl|bosTau2|chr25 (1478399-1478256)
               

               
               7-147, gnl|hg17|chr16 (371435-371946)
               

               
               7-147, gnl|Hg17|chr16 (371511-371651)
               

               
               7-147, gnl|loxAfr1|scaffold_8198 (29603-29099)
               

               
               7-147, gnl|mm7|chr17 (24297045-24296575)
               

               
               7-147, gnl|monDom2|scaffold_251 (2714-2163)
               

               
               7-147, gnl|rn3|chr10 (15386194-15385714)
               


               
               148-537, gnl|bosTau2|chr19 (27323223-27323612)
               

               
               148-537, gnl|Hg17|chr12 (119182792-119183181)
               

               
               148-537, gnl|Mm7|chr5 (148594366-148593977)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-147, gnl|bosTau2|chr25 (1478399-1478256)
               

               
               7-147, gnl|hg17|chr16 (371435-371946)
               

               
               7-147, gnl|Hg17|chr16 (371511-371651)
               

               
               7-147, gnl|loxAfr1|scaffold_8198 (29603-29099)
               

               
               7-147, gnl|mm7|chr17 (24297045-24296575)
               

               
               7-147, gnl|monDom2|scaffold_251 (2714-2163)
               

               
               7-147, gnl|rn3|chr10 (15386194-15385714)
               


               
               148-537, gnl|bosTau2|chr19 (27323223-27323612)
               

               
               148-537, gnl|Hg17|chr12 (119182792-119183181)
               

               
               148-537, gnl|Mm7|chr5 (148594366-148593977)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fli (0.202881)
               

               
               nca (0.136874)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               nca (0.136874)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	7-147, gnl\|bosTau2\|chr25 (1478399-1478256)
	7-147, gnl\|hg17\|chr16 (371435-371946)
	7-147, gnl\|Hg17\|chr16 (371511-371651)
	7-147, gnl\|loxAfr1\|scaffold_8198 (29603-29099)
	7-147, gnl\|mm7\|chr17 (24297045-24296575)
	7-147, gnl\|monDom2\|scaffold_251 (2714-2163)
	7-147, gnl\|rn3\|chr10 (15386194-15385714)

	148-537, gnl\|bosTau2\|chr19 (27323223-27323612)
	148-537, gnl\|Hg17\|chr12 (119182792-119183181)
	148-537, gnl\|Mm7\|chr5 (148594366-148593977)

	fli (0.202881)
	nca (0.136874)
	ecc (0.115035)
	nbm (0.0993246)
	jej (0.0989218)