Ss1.1-rfli740b_p11.5
|
CGTCTTCGCTTCCAAGATGACCAAGAAAAGAAGGAATAATGGCCGTGCCAAAAAGGGCCG
CGGCCACGTGCAGCCTATTCGCTGCACCAACTGTGCCCGATGCGTGCCCAAGGATAAGGC
CATTAAGAAGTTCGTTATTCGGAACATTGTAGAGGCCGCGGCGGTCAGGGACATTTCCGA
AGCGAGCGTTTTCGATGCCTATGTGCTTCCCAAGCTGTATGTGAAACTACATTATTGCGT
GAGTTGTGCCATTCACAGCAAGGTAGTCAGGAATCGTTCTCGTGAAGCCCGGAAGGATAG
AACACCTCCACCCCGATTTAGACCTGCGGGTGCTGCCCCACGACCTCCACCAAAGCCCAT
GTAAGGAACTGAGTTCTTAGAGACTGAAGGAATTCTATCCTTTAAAAAGACAATAAAATG
GAGACTATACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGTCTTCGCTTCCAAGATGACCAAGAAAAGAAGGAATAATGGCCGTGCCAAAAAGGGCCG
CGGCCACGTGCAGCCTATTCGCTGCACCAACTGTGCCCGATGCGTGCCCAAGGATAAGGC
CATTAAGAAGTTCGTTATTCGGAACATTGTAGAGGCCGCGGCGGTCAGGGACATTTCCGA
AGCGAGCGTTTTCGATGCCTATGTGCTTCCCAAGCTGTATGTGAAACTACATTATTGCGT
GAGTTGTGCCATTCACAGCAAGGTAGTCAGGAATCGTTCTCGTGAAGCCCGGAAGGATAG
AACACCTCCACCCCGATTTAGACCTGCGGGTGCTGCCCCACGACCTCCACCAAAGCCCAT
GTAAGGAACTGAGTTCTTAGAGACTGAAGGAATTCTATCCTTTAAAAAGACAATAAAATG
GAGACTATACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-504, gnl|bosTau2|chr7 (61395480-61395985) |
|
3-504, gnl|Hg17|chr4 (114493167-114492735) |
|
3-504, gnl|Mm7|chr8 (106039711-106039265) |
| |
|
7-452, gnl|bosTau2|chr2 (26197961-26197514) |
|
7-452, gnl|Hg17|chr8 (101977165-101977609) |
|
7-452, gnl|Mm7|chr8 (106039712-106039275) |
| |
|
10-448, gnl|bosTau2|chr14 (10066424-10066853) |
|
10-448, gnl|Hg17|chr4 (114493166-114492728) |
|
10-448, gnl|Mm7|chr6 (146725912-146725486) |
| |
|
101-273, gnl|bosTau2|chr12 (1264758-1264926) |
|
101-273, gnl|Hg17|chr1 (52158211-52158397) |
|
101-273, gnl|Mm7|chr16 (41453428-41453248) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-504, gnl|bosTau2|chr7 (61395480-61395985) |
|
3-504, gnl|Hg17|chr4 (114493167-114492735) |
|
3-504, gnl|Mm7|chr8 (106039711-106039265) |
| |
|
7-452, gnl|bosTau2|chr2 (26197961-26197514) |
|
7-452, gnl|Hg17|chr8 (101977165-101977609) |
|
7-452, gnl|Mm7|chr8 (106039712-106039275) |
| |
|
10-448, gnl|bosTau2|chr14 (10066424-10066853) |
|
10-448, gnl|Hg17|chr4 (114493166-114492728) |
|
10-448, gnl|Mm7|chr6 (146725912-146725486) |
| |
|
101-273, gnl|bosTau2|chr12 (1264758-1264926) |
|
101-273, gnl|Hg17|chr1 (52158211-52158397) |
|
101-273, gnl|Mm7|chr16 (41453428-41453248) |
|
fty (4.57183) |
|
eje (4.54635) |
|
cag (4.38464) |
|
lnt (4.12694) |
|
mcp (3.92491) |
|
nca (3.69559) |
|
elu (3.46821) |
|
fli (3.44898) |
|
nco (3.39641) |
|
med (2.9063) |
|
pty (2.56886) |
|
ill (2.4583) |
|
nep (2.2071) |
|
cly (2.17155) |
|
eru (2.16086) |
|
ese (2.15054) |
|
csp (2.09542) |
|
nje (1.99104) |
|
eli (1.97358) |
|
ton (1.9305) |
|
nms (1.92472) |
|
nlu (1.91681) |
|
nbm (1.88717) |
|
ebs (1.77452) |
|
col (1.75507) |
|
eep (1.7159) |
|
jca (1.7094) |
|
mas (1.68244) |
|
cga (1.67457) |
|
amn (1.67084) |
|
sto (1.61841) |
|
nmm (1.59363) |
|
cje (1.48711) |
|
jej (1.3849) |
|
fce (1.35796) |
|
hlv (1.25331) |
|
ute (1.19506) |
|
cov (1.18937) |
|
cli (1.06968) |
|
ecc (1.03532) |
|
fcc (0.988924) |
|
sag (0.913576) |
|
duo (0.864006) |
|
cmu (0.745573) |
|
eye (0.682012) |
|
che (0.68157) |
|
cut (0.679694) |
|
fhi (0.678311) |
|
cst (0.560146) |
|
fbs (0.526039) |
|
ece (0.45861) |
|
hyp (0.42851) |
|
csk (0.422238) |
|
cki (0.330469) |
|
pla (0.267344) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
aor (0.195274) |
|
sin (0.174948) |
|
rec (0.17307) |
|
bfe (0.149858) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
thg (0.126791) |
|
spc (0.113366) |
|
fty (4.57183) |
|
eje (4.54635) |
|
cag (4.38464) |
|
lnt (4.12694) |
|
mcp (3.92491) |
|
nca (3.69559) |
|
elu (3.46821) |
|
fli (3.44898) |
|
nco (3.39641) |
|
med (2.9063) |
|
pty (2.56886) |
|
ill (2.4583) |
|
nep (2.2071) |
|
cly (2.17155) |
|
eru (2.16086) |
|
ese (2.15054) |
|
csp (2.09542) |
|
nje (1.99104) |
|
eli (1.97358) |
|
ton (1.9305) |
|
nms (1.92472) |
|
nlu (1.91681) |
|
nbm (1.88717) |
|
ebs (1.77452) |
|
col (1.75507) |
|
eep (1.7159) |
|
jca (1.7094) |
|
mas (1.68244) |
|
cga (1.67457) |
|
amn (1.67084) |
|
sto (1.61841) |
|
nmm (1.59363) |
|
cje (1.48711) |
|
jej (1.3849) |
|
fce (1.35796) |
|
hlv (1.25331) |
|
ute (1.19506) |
|
cov (1.18937) |
|
cli (1.06968) |
|
ecc (1.03532) |
|
fcc (0.988924) |
|
sag (0.913576) |
|
duo (0.864006) |
|
cmu (0.745573) |
|
eye (0.682012) |
|
che (0.68157) |
|
cut (0.679694) |
|
fhi (0.678311) |
|
cst (0.560146) |
|
fbs (0.526039) |
|
ece (0.45861) |
|
hyp (0.42851) |
|
csk (0.422238) |
|
cki (0.330469) |
|
pla (0.267344) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
aor (0.195274) |
|
sin (0.174948) |
|
rec (0.17307) |
|
bfe (0.149858) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
thg (0.126791) |
|
spc (0.113366) |
