Ss1.1-rfli740b_p8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAATGAAGGACAGCCCCCCAATATGGCAGAGCAGGACCTTTGGAGGGTCGTATGTGAGG CAGACCAGTCCCATGAAGGTCCTAGTGCTCTGAATGACATAAGGGGTGCAGCTGACGGGA CCATGTTGCCTTGTGAATTTTGTGAGGAGCTCTACCCAGAGGAGCTGCTGATTGACCATC AGACGAGCTGTAACCCTTCATGTGCCTTACCTCCACTCGGTGTGGGTAGCACCTCACCCA AAGGGATGGAGGACCCTGATGTCATCTTCCAGGAGATAATGCAGCAGGCTGCAAGAAACC AGTTAGACTCTTTGGGCCTGAGGAGTTCACCTCCTGTGGAGGACAGCATCATCATCCCAT GTGAATTCTGTGGGGTCCAACTGGAAGAAGAGGTACTATTCCATCACCAGGACCAGTGTG ACCAACGCCCAGCCACAGCAAATAACCACGTGTCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAATGAAGGACAGCCCCCCAATATGGCAGAGCAGGACCTTTGGAGGGTCGTATGTGAGG CAGACCAGTCCCATGAAGGTCCTAGTGCTCTGAATGACATAAGGGGTGCAGCTGACGGGA CCATGTTGCCTTGTGAATTTTGTGAGGAGCTCTACCCAGAGGAGCTGCTGATTGACCATC AGACGAGCTGTAACCCTTCATGTGCCTTACCTCCACTCGGTGTGGGTAGCACCTCACCCA AAGGGATGGAGGACCCTGATGTCATCTTCCAGGAGATAATGCAGCAGGCTGCAAGAAACC AGTTAGACTCTTTGGGCCTGAGGAGTTCACCTCCTGTGGAGGACAGCATCATCATCCCAT GTGAATTCTGTGGGGTCCAACTGGAAGAAGAGGTACTATTCCATCACCAGGACCAGTGTG ACCAACGCCCAGCCACAGCAAATAACCACGTGTCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 3-108, - strand, RNAz p=0.993719 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-108, - strand, RNAz p=0.993719 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 3-108, gnl|bosTau2|chr17 (36978710-36978815) | |
| 3-108, gnl|canFam2|chr26 (12750732-12750960) | |
| 3-108, gnl|dasNov1|scaffold_11740 (46387-46612) | |
| 3-108, gnl|hg17|chr12 (111042575-111042799) | |
| 3-108, gnl|Hg17|chr12 (111042717-111042822) | |
| 3-108, gnl|loxAfr1|scaffold_7322 (5160-4932) | |
| 3-108, gnl|mm7|chr5 (120611972-120611746) | |
| 3-108, gnl|Mm7|chr5 (120611826-120611721) | |
| 3-108, gnl|monDom2|scaffold_110 (253127-253334) | |
| 3-108, gnl|oryCun1|scaffold_84263 (1383-1613) | |
| 3-108, gnl|panTro1|chr10 (113742764-113742995) | |
| 3-108, gnl|rheMac2|chr11 (113058680-113058909) | |
| 3-108, gnl|rn3|chr12 (36173641-36173866) | |
| 180-411, gnl|bosTau2|chr17 (36982583-36982817) | |
| 180-411, gnl|canFam2|chr26 (12760215-12760467) | |
| 180-411, gnl|dasNov1|scaffold_104188 (1056-801) | |
| 180-411, gnl|echTel1|scaffold_226178 (5133-5382) | |
| 180-411, gnl|hg17|chr12 (111048576-111048831) | |
| 180-411, gnl|Hg17|chr12 (111048595-111048829) | |
| 180-411, gnl|mm7|chr5 (120609254-120609001) | |
| 180-411, gnl|Mm7|chr5 (120609235-120609001) | |
| 180-411, gnl|monDom2|scaffold_110 (255676-255954) | |
| 180-411, gnl|oryCun1|scaffold_214611 (40477-40732) | |
| 180-411, gnl|panTro1|chr10 (113748106-113748361) | |
| 180-411, gnl|rheMac2|chr11 (113064380-113064635) | |
| 180-411, gnl|rn3|chr12 (36175981-36176235) | |
| 180-411, gnl|tetNig1|chr12 (6921377-6921113) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-108, gnl|bosTau2|chr17 (36978710-36978815) | |
| 3-108, gnl|canFam2|chr26 (12750732-12750960) | |
| 3-108, gnl|dasNov1|scaffold_11740 (46387-46612) | |
| 3-108, gnl|hg17|chr12 (111042575-111042799) | |
| 3-108, gnl|Hg17|chr12 (111042717-111042822) | |
| 3-108, gnl|loxAfr1|scaffold_7322 (5160-4932) | |
| 3-108, gnl|mm7|chr5 (120611972-120611746) | |
| 3-108, gnl|Mm7|chr5 (120611826-120611721) | |
| 3-108, gnl|monDom2|scaffold_110 (253127-253334) | |
| 3-108, gnl|oryCun1|scaffold_84263 (1383-1613) | |
| 3-108, gnl|panTro1|chr10 (113742764-113742995) | |
| 3-108, gnl|rheMac2|chr11 (113058680-113058909) | |
| 3-108, gnl|rn3|chr12 (36173641-36173866) | |
| 180-411, gnl|bosTau2|chr17 (36982583-36982817) | |
| 180-411, gnl|canFam2|chr26 (12760215-12760467) | |
| 180-411, gnl|dasNov1|scaffold_104188 (1056-801) | |
| 180-411, gnl|echTel1|scaffold_226178 (5133-5382) | |
| 180-411, gnl|hg17|chr12 (111048576-111048831) | |
| 180-411, gnl|Hg17|chr12 (111048595-111048829) | |
| 180-411, gnl|mm7|chr5 (120609254-120609001) | |
| 180-411, gnl|Mm7|chr5 (120609235-120609001) | |
| 180-411, gnl|monDom2|scaffold_110 (255676-255954) | |
| 180-411, gnl|oryCun1|scaffold_214611 (40477-40732) | |
| 180-411, gnl|panTro1|chr10 (113748106-113748361) | |
| 180-411, gnl|rheMac2|chr11 (113064380-113064635) | |
| 180-411, gnl|rn3|chr12 (36175981-36176235) | |
| 180-411, gnl|tetNig1|chr12 (6921377-6921113) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) |