Non-Coding RNA Search

Ss1.1-rfty502b_c1.5

Sequence:


               
               GGACACCCTGATCCAGAGTGGCCCTGCTCTCTCCCATCTGGTTAGCCAGACCACAGCACA
GGTGGGGCGGCCCCAGGCCCCCATGGGATCCTACCAGAGGCATTACTGAGGCTAAATATC
ACCTACCCCTGGTCCCTCATCCCCTGGCCTCCCACCTGTTGCGTTCCAAATAGAATCGTT
TGGAGGATGTTCGCTGCACCTCTCCAGGTCTACATCGAATGTCATGGGTTTCTACCACCT
GCTCTCTTCTGCCCAAGGCTGTGTTGCTTATTCCTCCCAGAGTCAAGAGTTTATACTGCA
TTGGGGGTGTATTTTTTGTTGTTGTGGGGGGGAGCTGTTTTGTTTTGTTGGGGAGTGGGT
TTTGTTAGAAAATAAATATCTCTGGGGTCATGGGCAGTGTAGGTGTCTGGGCTCCGTTGC
TATTTCATGAGTCTCTGTCAGCTGGATGTGGGGGCGGGAAGGAAGAAGCAGCCAAGCCCC
AACTGACTGAGTTTGGGATGGCGTTTTCACGTCATGAGCCACCGCCTTTGTTCATTTGGA
ACTTACCAAGGTTTTCCAGCCTCACACAGGCCCACCGCAGCTCAAGCTCCTGTCTGCAGC
TCCTGCCCAGTGTTGCAGAGCCCAATCTGGGCTGAGTGGGCATAACGTCTTCATGCCCCA
TCCCCGAGACATGGGGTCTGCTGGAGGATTCCTAAATCGGCTACTCTGGAGTTATTGAGG
AGTGGCAGCCACAGAGCAGGCACATTTCTGCCTGACCCAGGGTTGGTGGGTTTTGGTTTT
CTCTTTTTTTCTTCTTTGCTTTCACTTTGATAGAGGATCTCCCATGGACTGAACAGCTCC
AGTCACCAGACGTTTAACACAAACTGTGAATCTGGGCCCCAGCCACTCGTACCCCTAACA
GTTCTGTCAGCTTCTCCCTCACCAGAGATAGTTTTGTGGAGTTGGTTCTGAGAAGGCAAC
TCTAGACTCTGGCAGTAAACACCCACCTTTTCAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACACCCTGATCCAGAGTGGCCCTGCTCTCTCCCATCTGGTTAGCCAGACCACAGCACA
GGTGGGGCGGCCCCAGGCCCCCATGGGATCCTACCAGAGGCATTACTGAGGCTAAATATC
ACCTACCCCTGGTCCCTCATCCCCTGGCCTCCCACCTGTTGCGTTCCAAATAGAATCGTT
TGGAGGATGTTCGCTGCACCTCTCCAGGTCTACATCGAATGTCATGGGTTTCTACCACCT
GCTCTCTTCTGCCCAAGGCTGTGTTGCTTATTCCTCCCAGAGTCAAGAGTTTATACTGCA
TTGGGGGTGTATTTTTTGTTGTTGTGGGGGGGAGCTGTTTTGTTTTGTTGGGGAGTGGGT
TTTGTTAGAAAATAAATATCTCTGGGGTCATGGGCAGTGTAGGTGTCTGGGCTCCGTTGC
TATTTCATGAGTCTCTGTCAGCTGGATGTGGGGGCGGGAAGGAAGAAGCAGCCAAGCCCC
AACTGACTGAGTTTGGGATGGCGTTTTCACGTCATGAGCCACCGCCTTTGTTCATTTGGA
ACTTACCAAGGTTTTCCAGCCTCACACAGGCCCACCGCAGCTCAAGCTCCTGTCTGCAGC
TCCTGCCCAGTGTTGCAGAGCCCAATCTGGGCTGAGTGGGCATAACGTCTTCATGCCCCA
TCCCCGAGACATGGGGTCTGCTGGAGGATTCCTAAATCGGCTACTCTGGAGTTATTGAGG
AGTGGCAGCCACAGAGCAGGCACATTTCTGCCTGACCCAGGGTTGGTGGGTTTTGGTTTT
CTCTTTTTTTCTTCTTTGCTTTCACTTTGATAGAGGATCTCCCATGGACTGAACAGCTCC
AGTCACCAGACGTTTAACACAAACTGTGAATCTGGGCCCCAGCCACTCGTACCCCTAACA
GTTCTGTCAGCTTCTCCCTCACCAGAGATAGTTTTGTGGAGTTGGTTCTGAGAAGGCAAC
TCTAGACTCTGGCAGTAAACACCCACCTTTTCAGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               548-705, - strand, RNAz p=0.97492

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               548-705, - strand, RNAz p=0.97492

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               698-806, + strand, RNAmicro p=0.960513
               

               
               582-654, + strand, RNAmicro p=0.909791

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               698-806, + strand, RNAmicro p=0.960513
               

               
               582-654, + strand, RNAmicro p=0.909791

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-995, gnl|bosTau2|chr13 (54831703-54830710)
               

               
               1-995, gnl|Hg17|chr20 (44124454-44123519)
               

               
               1-995, gnl|Mm7|chr2 (164742344-164741482)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-995, gnl|bosTau2|chr13 (54831703-54830710)
               

               
               1-995, gnl|Hg17|chr20 (44124454-44123519)
               

               
               1-995, gnl|Mm7|chr2 (164742344-164741482)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

	698-806, + strand, RNAmicro p=0.960513
	582-654, + strand, RNAmicro p=0.909791

	1-995, gnl\|bosTau2\|chr13 (54831703-54830710)
	1-995, gnl\|Hg17\|chr20 (44124454-44123519)
	1-995, gnl\|Mm7\|chr2 (164742344-164741482)

	cbl (0.229595)
	ece (0.229305)
	nms (0.213858)
	nep (0.183925)
	fty (0.17584)
	cli (0.152812)
	cst (0.140036)
	nmm (0.132802)
	sug (0.127291)
	ese (0.126502)