Non-Coding RNA Search

Ss1.1-rfty504b_c24.5

Sequence:


               
               ACCTTCCCTCGTCTTGGATGTCCCACTCCAGGCAGTTTGATAGGCACCTTTGAGAAAAAT
ATAGTTATACTGTATTCTCAGGAGGTGATATGATTCATGAAGCTTTCTGGGATTAAAATG
AACCTGGTCAGCTGAAGTTTTGAGGCTTCTTGGTAACTGCTGTCCTCAGAGGTTTACCTG
GACCCTATATTTTCTGTTTTCTGAGGTAGGGGCTGTGCTGCACTGAGATGTGGGGCCCTC
TGCTCCGTCCACGGGAAGCAGTAACCTGTTGAAGCGTGTTTTGGGCTCTCCCCAGGGAAT
TGTGGGATCTTGCAGTTTACTCAAATCCTTGAAAAAACTGCTTTTGTCTTTTTCTGGTTG
TTATTTTATTTTTAATGCTTGTCTGGGTCCTCTGGTGCTAAGTTCCGGATTTCCTTGGGT
CTTCCGGTTGGAGCAGTGATCAACTGTGCTGATAACAGGAAAGTTTTATTAAGCTGCAAC
CCTGCCAAATTCCCCTTTCTAAAAGCACTCAGAGGGCCTTTTGCTCGTGACCTTCTGAGC
CGCCAAGAAAGGGCACAGTAAAAACACCACTTTTGGGTGAAGCGGCAGCAAGTTGTGCTG
TTTTGCTTCAATCGGTGGTGTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTTCCCTCGTCTTGGATGTCCCACTCCAGGCAGTTTGATAGGCACCTTTGAGAAAAAT
ATAGTTATACTGTATTCTCAGGAGGTGATATGATTCATGAAGCTTTCTGGGATTAAAATG
AACCTGGTCAGCTGAAGTTTTGAGGCTTCTTGGTAACTGCTGTCCTCAGAGGTTTACCTG
GACCCTATATTTTCTGTTTTCTGAGGTAGGGGCTGTGCTGCACTGAGATGTGGGGCCCTC
TGCTCCGTCCACGGGAAGCAGTAACCTGTTGAAGCGTGTTTTGGGCTCTCCCCAGGGAAT
TGTGGGATCTTGCAGTTTACTCAAATCCTTGAAAAAACTGCTTTTGTCTTTTTCTGGTTG
TTATTTTATTTTTAATGCTTGTCTGGGTCCTCTGGTGCTAAGTTCCGGATTTCCTTGGGT
CTTCCGGTTGGAGCAGTGATCAACTGTGCTGATAACAGGAAAGTTTTATTAAGCTGCAAC
CCTGCCAAATTCCCCTTTCTAAAAGCACTCAGAGGGCCTTTTGCTCGTGACCTTCTGAGC
CGCCAAGAAAGGGCACAGTAAAAACACCACTTTTGGGTGAAGCGGCAGCAAGTTGTGCTG
TTTTGCTTCAATCGGTGGTGTGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13186295|gb|AAB30262.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13186295|gb|AAB30262.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               463-624, + strand, RNAz p=0.863184

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               463-624, + strand, RNAz p=0.863184

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               12-372, gnl|bosTau2|chr10 (59511862-59511500)
               

               
               12-372, gnl|canFam2|chr8 (49404637-49405184)
               

               
               12-372, gnl|echTel1|scaffold_283323 (4200-3674)
               

               
               12-372, gnl|hg17|chr14 (72526285-72526863)
               

               
               12-372, gnl|Hg17|chr14 (72527580-72526607)
               

               
               12-372, gnl|panTro1|chr15 (72303645-72304220)
               

               
               12-372, gnl|rheMac2|chr7 (136084592-136085151)
               


               
               384-624, gnl|bosTau2|chr19 (41592836-41593075)
               

               
               384-624, gnl|Hg17|chr17 (34262877-34262646)
               

               
               384-624, gnl|Mm7|chr11 (97890921-97890682)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-372, gnl|bosTau2|chr10 (59511862-59511500)
               

               
               12-372, gnl|canFam2|chr8 (49404637-49405184)
               

               
               12-372, gnl|echTel1|scaffold_283323 (4200-3674)
               

               
               12-372, gnl|hg17|chr14 (72526285-72526863)
               

               
               12-372, gnl|Hg17|chr14 (72527580-72526607)
               

               
               12-372, gnl|panTro1|chr15 (72303645-72304220)
               

               
               12-372, gnl|rheMac2|chr7 (136084592-136085151)
               


               
               384-624, gnl|bosTau2|chr19 (41592836-41593075)
               

               
               384-624, gnl|Hg17|chr17 (34262877-34262646)
               

               
               384-624, gnl|Mm7|chr11 (97890921-97890682)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               lnt (0.142308)

	12-372, gnl\|bosTau2\|chr10 (59511862-59511500)
	12-372, gnl\|canFam2\|chr8 (49404637-49405184)
	12-372, gnl\|echTel1\|scaffold_283323 (4200-3674)
	12-372, gnl\|hg17\|chr14 (72526285-72526863)
	12-372, gnl\|Hg17\|chr14 (72527580-72526607)
	12-372, gnl\|panTro1\|chr15 (72303645-72304220)
	12-372, gnl\|rheMac2\|chr7 (136084592-136085151)

	384-624, gnl\|bosTau2\|chr19 (41592836-41593075)
	384-624, gnl\|Hg17\|chr17 (34262877-34262646)
	384-624, gnl\|Mm7\|chr11 (97890921-97890682)