Non-Coding RNA Search

Ss1.1-rfty505b_c16.5

Sequence:


               
               TTGATTCCTAGTATTGTTCCTAAAATTAAATTGTTATTTGAAAAAATT------------
------------AGTGGGTTAAGGGATTTGTTGCTGAGCAGGTTTCCCATCATCCTCCAG
TCTCAGGATTTTATGCAGAATGTGCAGAGAGGAAGATGTGTGTAAATGCGCATGTCTGGA
CTAAGAGCAAATTCTTAGGCATGTCGATAGGCGTGACAATGGTTGGGGAAGGTGTCCTCA
GTCTCCTGGAGCATGGAGAAGAGTATACATTTTCTCTACCTTGTGCATATGCCAGGTCAA
TTTTAACTGTTCCTTGGGTGGAGCTGGGTGGCAAAATCAGTGTCAACTGTGCAAAAACTG
GATATTCAGCCAGCATCACTTTTCATACAAAGCCATTTTATGGTGGCAAACTGCACCGGG
TTACCGGTGAAGTGAAGCACAACATCACCAACACTGTCGTATGCAAAGTACAAGGGGAAT
GGAATAGTGTTCTCGAATTCACTTACAGTAACGGAGAGACAAAGTACGTGGACTTGACTA
AATTGGCAGTGACAAAGAAAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGATTCCTAGTATTGTTCCTAAAATTAAATTGTTATTTGAAAAAATT------------
------------AGTGGGTTAAGGGATTTGTTGCTGAGCAGGTTTCCCATCATCCTCCAG
TCTCAGGATTTTATGCAGAATGTGCAGAGAGGAAGATGTGTGTAAATGCGCATGTCTGGA
CTAAGAGCAAATTCTTAGGCATGTCGATAGGCGTGACAATGGTTGGGGAAGGTGTCCTCA
GTCTCCTGGAGCATGGAGAAGAGTATACATTTTCTCTACCTTGTGCATATGCCAGGTCAA
TTTTAACTGTTCCTTGGGTGGAGCTGGGTGGCAAAATCAGTGTCAACTGTGCAAAAACTG
GATATTCAGCCAGCATCACTTTTCATACAAAGCCATTTTATGGTGGCAAACTGCACCGGG
TTACCGGTGAAGTGAAGCACAACATCACCAACACTGTCGTATGCAAAGTACAAGGGGAAT
GGAATAGTGTTCTCGAATTCACTTACAGTAACGGAGAGACAAAGTACGTGGACTTGACTA
AATTGGCAGTGACAAAGAAAAGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               73-209, + strand, RNAz p=0.956362

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-209, + strand, RNAz p=0.956362

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               61-209, gnl|bosTau2|chr1 (37414968-37415116)
               

               
               61-209, gnl|Hg17|chr3 (126753861-126753713)
               

               
               61-209, gnl|Mm7|chr16 (32901733-32901881)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-209, gnl|bosTau2|chr1 (37414968-37415116)
               

               
               61-209, gnl|Hg17|chr3 (126753861-126753713)
               

               
               61-209, gnl|Mm7|chr16 (32901733-32901881)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fty (0.17584)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

	61-209, gnl\|bosTau2\|chr1 (37414968-37415116)
	61-209, gnl\|Hg17\|chr3 (126753861-126753713)
	61-209, gnl\|Mm7\|chr16 (32901733-32901881)