Non-Coding RNA Search

Ss1.1-rfty506b_d22.5

Sequence:


               
               ACTTTTATTTCCCAGATTCAATTTTTGCTGCTGTGAAACAGCTCTGATGAACACTAAATA
TTAATTTCAATTAGCTGGATTGTATATACTTGCAGATTTAACAAAATTTTAGGGAAATCG
AAGAAGACATGTAGAATTTTTCAGTCTTCTGCTAAGCACGTATAGTAAAGATATCTGCTT
GTGTTGAGTTTTGTAAACACATTTAGTCAGGATTTAGAATTGCAGTCACTGGCAGGTATC
TATGCATTCATAGAACTTCTAAAGGTCCCAGGATCACTTTTAAAGGGATTTTTATTAGTT
TAAAGATAAATAAAGTCAGCTGAATCTACATGTCTCTTGTTTTATTTCTCTTCAAACTTG
AAAACAGTAAATCTGCAGATACTGTGAGGCACAAATTATGCTGTCAACCTACTGTTGCTC
TGGTTTTAGATTCCCACTTCGTACATTACCAAGAGTCGATCACTGATTTAAAATTTTTAA
TTTCTATAGTTAAGATTTACTGCATAATATAGAATATTAAAGTTAAGTTAATGTACTAAC
ATTTCTCCTTTGGAGAAAGTTTTAATCCACTTCAGGATGCATATATCAAGATACTTTCAT
ATACAGGATAGCCTAATTTTATTTGTCTAAATATGCTTAATATGCCCCAGATTGCAAATG
CATCAGTCAGTAACATCACTGTCTGTATGTGGAAGACATGTTCCCATGAATCATATGTGA
AGATGTCAATAAGCTTGCATTAAGCCACCTGCTTTGTAAGTGGATTGATTAATAAATAAC
TTATATTTCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTTATTTCCCAGATTCAATTTTTGCTGCTGTGAAACAGCTCTGATGAACACTAAATA
TTAATTTCAATTAGCTGGATTGTATATACTTGCAGATTTAACAAAATTTTAGGGAAATCG
AAGAAGACATGTAGAATTTTTCAGTCTTCTGCTAAGCACGTATAGTAAAGATATCTGCTT
GTGTTGAGTTTTGTAAACACATTTAGTCAGGATTTAGAATTGCAGTCACTGGCAGGTATC
TATGCATTCATAGAACTTCTAAAGGTCCCAGGATCACTTTTAAAGGGATTTTTATTAGTT
TAAAGATAAATAAAGTCAGCTGAATCTACATGTCTCTTGTTTTATTTCTCTTCAAACTTG
AAAACAGTAAATCTGCAGATACTGTGAGGCACAAATTATGCTGTCAACCTACTGTTGCTC
TGGTTTTAGATTCCCACTTCGTACATTACCAAGAGTCGATCACTGATTTAAAATTTTTAA
TTTCTATAGTTAAGATTTACTGCATAATATAGAATATTAAAGTTAAGTTAATGTACTAAC
ATTTCTCCTTTGGAGAAAGTTTTAATCCACTTCAGGATGCATATATCAAGATACTTTCAT
ATACAGGATAGCCTAATTTTATTTGTCTAAATATGCTTAATATGCCCCAGATTGCAAATG
CATCAGTCAGTAACATCACTGTCTGTATGTGGAAGACATGTTCCCATGAATCATATGTGA
AGATGTCAATAAGCTTGCATTAAGCCACCTGCTTTGTAAGTGGATTGATTAATAAATAAC
TTATATTTCTAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-122, - strand, RNAz p=0.823275
               

               
               637-755, + strand, RNAz p=0.65512

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-122, - strand, RNAz p=0.823275
               

               
               637-755, + strand, RNAz p=0.65512

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK131488, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK131488, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-792, gnl|bosTau2|chr10 (38295030-38294239)
               

               
               4-792, gnl|Hg17|chr15 (57175129-57175918)
               

               
               4-792, gnl|Mm7|chr9 (70458151-70457378)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-792, gnl|bosTau2|chr10 (38295030-38294239)
               

               
               4-792, gnl|Hg17|chr15 (57175129-57175918)
               

               
               4-792, gnl|Mm7|chr9 (70458151-70457378)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fty (0.17584)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

	4-122, - strand, RNAz p=0.823275
	637-755, + strand, RNAz p=0.65512

	4-792, gnl\|bosTau2\|chr10 (38295030-38294239)
	4-792, gnl\|Hg17\|chr15 (57175129-57175918)
	4-792, gnl\|Mm7\|chr9 (70458151-70457378)

	fty (0.17584)
	rec (0.17307)
	fhi (0.169578)
	tbr (0.154178)
	lin (0.145603)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)