Non-Coding RNA Search

Ss1.1-rfty506b_p15.5

Sequence:


               
               TTTTTACAATGGTGTAATATTTATTGTACCTATCTACTTAAGAAATTTTAATGTATAAAA
ATTACATTAAAACATCAATATGCAATTGTTTTCCCACCACTCCAAAATTTTAATATTGAT
TGAAGATTCTGGACCAGAAAATGTGTAAAGAGAAGACAAGGAATATCAAAATAACTTATA
ACAAATTTCTAAAATCTCTCACATATTAAAATTGGAAAGACAAAAATATGATTTACAATA
CATGTTTGCCATTATGGTAGAGATAAGAAAATAGTACCCATACTAAAATTAATTCATCCT
ACTTATCAAAATTCCTAGTATAAGAATGAAAATATTCAGATGCTTATAAATAGATATTCA
AAAGTTTCTTTTGGACAACATTCTTTGGTGTTCATAAAACTGCATATATATTATGATTCT
ACTTATACAGTCTTTTCAGACTATACATTCAGTTTGAATTGGAAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTACAATGGTGTAATATTTATTGTACCTATCTACTTAAGAAATTTTAATGTATAAAA
ATTACATTAAAACATCAATATGCAATTGTTTTCCCACCACTCCAAAATTTTAATATTGAT
TGAAGATTCTGGACCAGAAAATGTGTAAAGAGAAGACAAGGAATATCAAAATAACTTATA
ACAAATTTCTAAAATCTCTCACATATTAAAATTGGAAAGACAAAAATATGATTTACAATA
CATGTTTGCCATTATGGTAGAGATAAGAAAATAGTACCCATACTAAAATTAATTCATCCT
ACTTATCAAAATTCCTAGTATAAGAATGAAAATATTCAGATGCTTATAAATAGATATTCA
AAAGTTTCTTTTGGACAACATTCTTTGGTGTTCATAAAACTGCATATATATTATGATTCT
ACTTATACAGTCTTTTCAGACTATACATTCAGTTTGAATTGGAAATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               353-468, + strand, RNAz p=0.994715

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-468, + strand, RNAz p=0.994715

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               83-468, gnl|bosTau2|chr13 (23147556-23147171)
               

               
               83-468, gnl|Hg17|chr5 (68462649-68462277)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-468, gnl|bosTau2|chr13 (23147556-23147171)
               

               
               83-468, gnl|Hg17|chr5 (68462649-68462277)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	83-468, gnl\|bosTau2\|chr13 (23147556-23147171)
	83-468, gnl\|Hg17\|chr5 (68462649-68462277)