Ss1.1-rfty507b_h3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACTATGTCCCTGCACGGCAAACGGGGGGAGATCTACAAGTATGAAGCGCCCTGGACCG TCTACGCCATGAACTGGAGCGTGCGGCCCGACAAGCGCTTTCGCCTGGCGCTGGGCAGCT TCGTGGAGGAGTACAACAACAAGGTTCAGCTTGTTGGTTTAGATGAAGAGAGTTCGGAGT TTATTTGCCGAAACACGTTTGACCATCCGTACCCCACCACAAAGCTCATGTGGATCCCGG ACACAAAAGGCGTCTATCCAGACCTGCTGGCGACCAGTGGTGACTATCTCCGTGTGTGGA GGGTTGGTGAAACAGAGACCAGGCTGGAATGTTTGCTAAACAATAACAAGAATTCGGATT TCTGTGCTCCTCTGACCTCCTTTGACTGGAATGAGGTGGATCCTTATCTTTTAGGTACCT CCAGCATTGACACGACTTGTACCATCTGGGGGCTGGAGACAGGGCAGGTGCTGGGGCGAG TGAATCTTGTGTCTGGCCATGTGAAGACCCAGCTGATCGCCCATGACAAAGAGGTCTATG ATATCGCGTTTAGCCGGGCTGGTGGCGGCAGGGACATGTTTGCCTCTGTGGGTGCTGACG GCTCCGTGCGGATGTTTGACCTCCGTCATCTTGAACACAGCACCATCATCTACGAGGACC CTCAGCATCACCCACTGCTCCGCCTCTGCTGGAACAAACAGGACCCCAACTACCTGGCCA CCATGGCCATGGATGGAATGGAGGTAGTGATTCTGGACGTCCGAGTTCCATGCACACCTG TTGCCAGGTTAAACAACCACCGAGCATGTGTCAATGGCATTGCCTGGGCCCCTCATTCGT CCTGCCACATCTGTACTGCAGCGGATGACCATCAGGCTCTCATCTGGGACATCCAGCAGA TGCCCCGGGCCATCGAGGACCCTATCCTGGCCTACACAGCCGAGGGCGAGATCAACAACG TGCAGTGGGCGTCGACTCAGCCTGACTGGATCGCCATCTGCTACAACAACTGCCTGGAGA TCCTCAGAGTGTAGTGTCGGTGGCACCGTGCCCGCCAGGCAGGGGCTTGTGTGTTTCCCG CCTCTGTCCCACCCCCAAAGTAAGAAGAAACGTGTTTCTGGTGGCCAGTACGTCTTTCAT TGCTTTGCACCCACTGTTGCCAGAAGCTGCTCTAGGAGTTTCCGGCCGGTCACCCCACGG CTCTCTGGGCCGGCCTCAGTGCTGTGTGCCGCCTCCTCAGCCCAGGGCTGAGTTTTAAGA TTTTCTCTTCTTTCCTCTTCTCCTTTGGTTCCTCAATTAAAATTTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACTATGTCCCTGCACGGCAAACGGGGGGAGATCTACAAGTATGAAGCGCCCTGGACCG TCTACGCCATGAACTGGAGCGTGCGGCCCGACAAGCGCTTTCGCCTGGCGCTGGGCAGCT TCGTGGAGGAGTACAACAACAAGGTTCAGCTTGTTGGTTTAGATGAAGAGAGTTCGGAGT TTATTTGCCGAAACACGTTTGACCATCCGTACCCCACCACAAAGCTCATGTGGATCCCGG ACACAAAAGGCGTCTATCCAGACCTGCTGGCGACCAGTGGTGACTATCTCCGTGTGTGGA GGGTTGGTGAAACAGAGACCAGGCTGGAATGTTTGCTAAACAATAACAAGAATTCGGATT TCTGTGCTCCTCTGACCTCCTTTGACTGGAATGAGGTGGATCCTTATCTTTTAGGTACCT CCAGCATTGACACGACTTGTACCATCTGGGGGCTGGAGACAGGGCAGGTGCTGGGGCGAG TGAATCTTGTGTCTGGCCATGTGAAGACCCAGCTGATCGCCCATGACAAAGAGGTCTATG ATATCGCGTTTAGCCGGGCTGGTGGCGGCAGGGACATGTTTGCCTCTGTGGGTGCTGACG GCTCCGTGCGGATGTTTGACCTCCGTCATCTTGAACACAGCACCATCATCTACGAGGACC CTCAGCATCACCCACTGCTCCGCCTCTGCTGGAACAAACAGGACCCCAACTACCTGGCCA CCATGGCCATGGATGGAATGGAGGTAGTGATTCTGGACGTCCGAGTTCCATGCACACCTG TTGCCAGGTTAAACAACCACCGAGCATGTGTCAATGGCATTGCCTGGGCCCCTCATTCGT CCTGCCACATCTGTACTGCAGCGGATGACCATCAGGCTCTCATCTGGGACATCCAGCAGA TGCCCCGGGCCATCGAGGACCCTATCCTGGCCTACACAGCCGAGGGCGAGATCAACAACG TGCAGTGGGCGTCGACTCAGCCTGACTGGATCGCCATCTGCTACAACAACTGCCTGGAGA TCCTCAGAGTGTAGTGTCGGTGGCACCGTGCCCGCCAGGCAGGGGCTTGTGTGTTTCCCG CCTCTGTCCCACCCCCAAAGTAAGAAGAAACGTGTTTCTGGTGGCCAGTACGTCTTTCAT TGCTTTGCACCCACTGTTGCCAGAAGCTGCTCTAGGAGTTTCCGGCCGGTCACCCCACGG CTCTCTGGGCCGGCCTCAGTGCTGTGTGCCGCCTCCTCAGCCCAGGGCTGAGTTTTAAGA TTTTCTCTTCTTTCCTCTTCTCCTTTGGTTCCTCAATTAAAATTTTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 859-977, - strand, RNAz p=0.69644 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 859-977, - strand, RNAz p=0.69644 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-145, gnl|bosTau2|chr19 (40292173-40292317) | |
| 1-145, gnl|Hg17|chr17 (58981768-58981910) | |
| 1-145, gnl|Mm7|chr11 (106146160-106146304) | |
| 302-417, gnl|bosTau2|chr19 (40312548-40312663) | |
| 302-417, gnl|canFam2|chr9 (14707035-14707168) | |
| 302-417, gnl|dasNov1|scaffold_45047 (4966-5100) | |
| 302-417, gnl|echTel1|scaffold_190341 (4862-4728) | |
| 302-417, gnl|fr1|chrUn (140110735-140110604) | |
| 302-417, gnl|galGal2|chr27 (1160651-1160785) | |
| 302-417, gnl|hg17|chr17 (59010416-59010550) | |
| 302-417, gnl|Hg17|chr17 (59010429-59010544) | |
| 302-417, gnl|loxAfr1|scaffold_2991 (58796-58663) | |
| 302-417, gnl|mm7|chr11 (106156664-106156798) | |
| 302-417, gnl|Mm7|chr11 (106156677-106156792) | |
| 302-417, gnl|monDom2|scaffold_18 (35997456-35997321) | |
| 302-417, gnl|oryCun1|scaffold_11572 (189-55) | |
| 302-417, gnl|panTro1|chr19 (46127312-46127178) | |
| 302-417, gnl|rn3|chr10 (95450295-95450429) | |
| 302-417, gnl|tetNig1|chr3 (13698696-13698576) | |
| 302-417, gnl|xenTro1|scaffold_127 (105509-105375) | |
| 526-745, gnl|bosTau2|chr19 (40315842-40316061) | |
| 526-745, gnl|canFam2|chr9 (14710223-14710465) | |
| 526-745, gnl|dasNov1|scaffold_45047 (7906-8147) | |
| 526-745, gnl|echTel1|scaffold_190341 (1403-1161) | |
| 526-745, gnl|fr1|chrUn (140110316-140110090) | |
| 526-745, gnl|galGal2|chr27 (1161903-1162133) | |
| 526-745, gnl|hg17|chr17 (59014580-59014822) | |
| 526-745, gnl|Hg17|chr17 (59014587-59014807) | |
| 526-745, gnl|loxAfr1|scaffold_2991 (51785-51543) | |
| 526-745, gnl|mm7|chr11 (106160784-106161018) | |
| 526-745, gnl|Mm7|chr11 (106160790-106161009) | |
| 526-745, gnl|monDom2|scaffold_18 (35991065-35990825) | |
| 526-745, gnl|oryCun1|scaffold_207843 (11361-11121) | |
| 526-745, gnl|panTro1|chr19 (46123149-46122908) | |
| 526-745, gnl|rheMac2|chr16 (59096170-59096411) | |
| 526-745, gnl|rn3|chr10 (95462335-95462569) | |
| 526-745, gnl|tetNig1|chr3 (13698272-13698056) | |
| 526-745, gnl|xenTro1|scaffold_127 (102886-102652) | |
| 859-1308, gnl|bosTau2|chr19 (40318292-40318737) | |
| 859-1308, gnl|Hg17|chr17 (59020091-59020541) | |
| 859-1308, gnl|Mm7|chr11 (106163721-106164161) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-145, gnl|bosTau2|chr19 (40292173-40292317) | |
| 1-145, gnl|Hg17|chr17 (58981768-58981910) | |
| 1-145, gnl|Mm7|chr11 (106146160-106146304) | |
| 302-417, gnl|bosTau2|chr19 (40312548-40312663) | |
| 302-417, gnl|canFam2|chr9 (14707035-14707168) | |
| 302-417, gnl|dasNov1|scaffold_45047 (4966-5100) | |
| 302-417, gnl|echTel1|scaffold_190341 (4862-4728) | |
| 302-417, gnl|fr1|chrUn (140110735-140110604) | |
| 302-417, gnl|galGal2|chr27 (1160651-1160785) | |
| 302-417, gnl|hg17|chr17 (59010416-59010550) | |
| 302-417, gnl|Hg17|chr17 (59010429-59010544) | |
| 302-417, gnl|loxAfr1|scaffold_2991 (58796-58663) | |
| 302-417, gnl|mm7|chr11 (106156664-106156798) | |
| 302-417, gnl|Mm7|chr11 (106156677-106156792) | |
| 302-417, gnl|monDom2|scaffold_18 (35997456-35997321) | |
| 302-417, gnl|oryCun1|scaffold_11572 (189-55) | |
| 302-417, gnl|panTro1|chr19 (46127312-46127178) | |
| 302-417, gnl|rn3|chr10 (95450295-95450429) | |
| 302-417, gnl|tetNig1|chr3 (13698696-13698576) | |
| 302-417, gnl|xenTro1|scaffold_127 (105509-105375) | |
| 526-745, gnl|bosTau2|chr19 (40315842-40316061) | |
| 526-745, gnl|canFam2|chr9 (14710223-14710465) | |
| 526-745, gnl|dasNov1|scaffold_45047 (7906-8147) | |
| 526-745, gnl|echTel1|scaffold_190341 (1403-1161) | |
| 526-745, gnl|fr1|chrUn (140110316-140110090) | |
| 526-745, gnl|galGal2|chr27 (1161903-1162133) | |
| 526-745, gnl|hg17|chr17 (59014580-59014822) | |
| 526-745, gnl|Hg17|chr17 (59014587-59014807) | |
| 526-745, gnl|loxAfr1|scaffold_2991 (51785-51543) | |
| 526-745, gnl|mm7|chr11 (106160784-106161018) | |
| 526-745, gnl|Mm7|chr11 (106160790-106161009) | |
| 526-745, gnl|monDom2|scaffold_18 (35991065-35990825) | |
| 526-745, gnl|oryCun1|scaffold_207843 (11361-11121) | |
| 526-745, gnl|panTro1|chr19 (46123149-46122908) | |
| 526-745, gnl|rheMac2|chr16 (59096170-59096411) | |
| 526-745, gnl|rn3|chr10 (95462335-95462569) | |
| 526-745, gnl|tetNig1|chr3 (13698272-13698056) | |
| 526-745, gnl|xenTro1|scaffold_127 (102886-102652) | |
| 859-1308, gnl|bosTau2|chr19 (40318292-40318737) | |
| 859-1308, gnl|Hg17|chr17 (59020091-59020541) | |
| 859-1308, gnl|Mm7|chr11 (106163721-106164161) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| nmm (0.265604) | |
| tes (0.207814) | |
| fty (0.17584) | |
| rec (0.17307) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.265604) | |
| tes (0.207814) | |
| fty (0.17584) | |
| rec (0.17307) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eje (0.0988338) |