Non-Coding RNA Search

Ss1.1-rfty507b_p8.5

Sequence:


               
               GTTGACAGAAAGGAAACTAGACTCTTGGTGCAGAAGGAGCTAAGAGTTGGGATGAGGCTC
AGTGGGATGGATTGACAATTTGGAAATACTGGAACCGAATGGGTAATCAGACAGGTGGGT
TCCAGGATGGAGTGGCAAGTGTAGTTTGCCCCAGTATTCTGCTTCATTCTTTCTTTGCTA
AATAACACAGAAAACATTTGAGTTTTACAGCTTTTCATACCATAGTATATAATCTGCTAT
TCCAGGGAAAGAAAAAAAAAAAGGTATTGCTCTAAGAGAATTATATCACAGTATCCTAGA
TTGTAGAACCTGGCTAACCATGTGTTTATTTCTTCAAGTTATCATTTATATTGGTACTGA
CTTTTATTTGTGTTTATGGATAAAAGTAGAAAGTATGATACTTGGGTTTTGCTCTCTCTT
ACCCCTGAAAGTTAAGTCAGAAGGCAGCAATTTCATTTGGTGAAATTTAACTTAGAGATT
GTTAATCTTCTATTTCATTAATGTGAACAACCTTGAGCAAACAACAGTTTTGACAGCATT
TCTGCTGATGTCTAGTTAGCCATCCTTTTCAGGTGATTATACAATAAAATGTCCTAGGGC
TAGTAATTCTAGCTTAAAGTTGTCTGTATTTTTACACATTGTTACAATTTTTTTCCTCCA
AATTTTATAACTGAAATTCTATAATCTCTGCATACTTGATGGCATCCACTTCAGTATTGA
TTGGGTGATTATGGGTAGAATTCTGATGCTGATTTAAAACTTAGTTTGCCCTTTCTCAAA
AGTGCTTGACCTCTGAGTAATAATTGTGTTGAAATGAAGCATAGTTAATAATTAACCAGA
TATGTCTAAAATAGACTAAAGTCTATCGTTTCATCAAACCAGTATTTTTATAATAAGACT
AGTTTTGCTTTCCATTTTATGGTAGATACTGTTGGACCCCTCAAATAGAGTTATATAAGT
AAATCTTCCTGGAATAGTCCATAACCAAAAGGGCAGAAAATAGTGTAAGGTATTTAGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGACAGAAAGGAAACTAGACTCTTGGTGCAGAAGGAGCTAAGAGTTGGGATGAGGCTC
AGTGGGATGGATTGACAATTTGGAAATACTGGAACCGAATGGGTAATCAGACAGGTGGGT
TCCAGGATGGAGTGGCAAGTGTAGTTTGCCCCAGTATTCTGCTTCATTCTTTCTTTGCTA
AATAACACAGAAAACATTTGAGTTTTACAGCTTTTCATACCATAGTATATAATCTGCTAT
TCCAGGGAAAGAAAAAAAAAAAGGTATTGCTCTAAGAGAATTATATCACAGTATCCTAGA
TTGTAGAACCTGGCTAACCATGTGTTTATTTCTTCAAGTTATCATTTATATTGGTACTGA
CTTTTATTTGTGTTTATGGATAAAAGTAGAAAGTATGATACTTGGGTTTTGCTCTCTCTT
ACCCCTGAAAGTTAAGTCAGAAGGCAGCAATTTCATTTGGTGAAATTTAACTTAGAGATT
GTTAATCTTCTATTTCATTAATGTGAACAACCTTGAGCAAACAACAGTTTTGACAGCATT
TCTGCTGATGTCTAGTTAGCCATCCTTTTCAGGTGATTATACAATAAAATGTCCTAGGGC
TAGTAATTCTAGCTTAAAGTTGTCTGTATTTTTACACATTGTTACAATTTTTTTCCTCCA
AATTTTATAACTGAAATTCTATAATCTCTGCATACTTGATGGCATCCACTTCAGTATTGA
TTGGGTGATTATGGGTAGAATTCTGATGCTGATTTAAAACTTAGTTTGCCCTTTCTCAAA
AGTGCTTGACCTCTGAGTAATAATTGTGTTGAAATGAAGCATAGTTAATAATTAACCAGA
TATGTCTAAAATAGACTAAAGTCTATCGTTTCATCAAACCAGTATTTTTATAATAAGACT
AGTTTTGCTTTCCATTTTATGGTAGATACTGTTGGACCCCTCAAATAGAGTTATATAAGT
AAATCTTCCTGGAATAGTCCATAACCAAAAGGGCAGAAAATAGTGTAAGGTATTTAGTAT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               92-1020, gnl|bosTau2|chr1 (43155370-43154509)
               

               
               92-1020, gnl|Hg17|chr3 (197685250-197684226)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-1020, gnl|bosTau2|chr1 (43155370-43154509)
               

               
               92-1020, gnl|Hg17|chr3 (197685250-197684226)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               kid (0.389206)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               nca (0.136874)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.389206)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               nca (0.136874)

	92-1020, gnl\|bosTau2\|chr1 (43155370-43154509)
	92-1020, gnl\|Hg17\|chr3 (197685250-197684226)