Non-Coding RNA Search

Ss1.1-rfty515b_i19.5

Sequence:


               
               GGCACTGGGGGGGGGGGTCTCTCTCCTGGTGCTCCTTCACTTTGGGCCTGGCCTCAGGCC
CCTGGTGCTTCCCCCCCTCCTCCTGGGGATGGGGGCCCGTGAAGAGCAAATGAGCCAAAC
GTGACCACTAGCCTCCTGGAGCCAGAGAGTGGGGTGCCTCTGCCGGCGGCCCCAGCCCGG
CGCCCAGCCATCTTCCCTGAGCCAGCCGGCAGGTGGTGGGCACGCCTGCCTCACCTTCAT
CTGGGGGTGGCCAGGAGGGGCCCAGACTGTGAATCCTGTGCTCTGCCCGTGACCACCCCC
TGCCCCCATCAATCTCATTGCATAGGTTTAGAGAGAGCACGTGTGACCACTGGCATTCAT
TTGGGGGGTGGGATATTTTGGCGGAAACCGCCCCAGCCTTAGTCCCCAGGGCGAAGCGCT
GGGGGGAAGACGGGGAGTCAGGGAGGGGGGGAATCTCAGAAGAGGGAGGAGTCTGGGAGC
GGGGAGGGATGGCCCAGCCTGTAAAATACTGTATATGCGCTGCTGTAGATACCGGAATGA
ATTTTCTGTACATGTTTGGTTAATTTTTTTTGTACATGATTTTTGTATGTTTCCTTTTCA
ATAAAATCAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACTGGGGGGGGGGGTCTCTCTCCTGGTGCTCCTTCACTTTGGGCCTGGCCTCAGGCC
CCTGGTGCTTCCCCCCCTCCTCCTGGGGATGGGGGCCCGTGAAGAGCAAATGAGCCAAAC
GTGACCACTAGCCTCCTGGAGCCAGAGAGTGGGGTGCCTCTGCCGGCGGCCCCAGCCCGG
CGCCCAGCCATCTTCCCTGAGCCAGCCGGCAGGTGGTGGGCACGCCTGCCTCACCTTCAT
CTGGGGGTGGCCAGGAGGGGCCCAGACTGTGAATCCTGTGCTCTGCCCGTGACCACCCCC
TGCCCCCATCAATCTCATTGCATAGGTTTAGAGAGAGCACGTGTGACCACTGGCATTCAT
TTGGGGGGTGGGATATTTTGGCGGAAACCGCCCCAGCCTTAGTCCCCAGGGCGAAGCGCT
GGGGGGAAGACGGGGAGTCAGGGAGGGGGGGAATCTCAGAAGAGGGAGGAGTCTGGGAGC
GGGGAGGGATGGCCCAGCCTGTAAAATACTGTATATGCGCTGCTGTAGATACCGGAATGA
ATTTTCTGTACATGTTTGGTTAATTTTTTTTGTACATGATTTTTGTATGTTTCCTTTTCA
ATAAAATCAGAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               3-160, - strand, RNAz p=0.992555
               

               
               347-503, + strand, RNAz p=0.993904

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-160, - strand, RNAz p=0.992555
               

               
               347-503, + strand, RNAz p=0.993904

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               28-154, BP264926 Sugano cDNA library, muscle Homo sapiens cDNA clone 
(dbj|BP264926.1|), blast E-value=2e-40, identity=91.34% 
               

               
               28-154, BY800084 Homo sapiens eye Homo sapiens cDNA clone HE5143.seq 5', 
(dbj|BY800084.1|), blast E-value=2e-40, identity=91.34% 
               

               
               28-154, AGENCOURT_7833793 NIH_MGC_67 Homo sapiens cDNA clone IMAGE 
(gb|BQ424506.1|), blast E-value=2e-40, identity=91.34% 
               

               
               28-154, UI-H-DP0-avq-k-04-0-UI.s1 NCI_CGAP_Fs1 Homo sapiens cDNA clone 
(gb|CA443400.1|), blast E-value=2e-40, identity=91.34% 
               

               
               31-157, 969007 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK846502.1|), 
blast E-value=1.96182e-44, identity=92.91% 
               

               
               29-156, LIB3629-009-Q1-K6-H7 LIB3629 Canis familiaris cDNA clone 
(gb|DN365019.1|), blast E-value=4.2039e-45, identity=92.97%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               28-154, BP264926 Sugano cDNA library, muscle Homo sapiens cDNA clone 
(dbj|BP264926.1|), blast E-value=2e-40, identity=91.34% 
               

               
               28-154, BY800084 Homo sapiens eye Homo sapiens cDNA clone HE5143.seq 5', 
(dbj|BY800084.1|), blast E-value=2e-40, identity=91.34% 
               

               
               28-154, AGENCOURT_7833793 NIH_MGC_67 Homo sapiens cDNA clone IMAGE 
(gb|BQ424506.1|), blast E-value=2e-40, identity=91.34% 
               

               
               28-154, UI-H-DP0-avq-k-04-0-UI.s1 NCI_CGAP_Fs1 Homo sapiens cDNA clone 
(gb|CA443400.1|), blast E-value=2e-40, identity=91.34% 
               

               
               31-157, 969007 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK846502.1|), 
blast E-value=1.96182e-44, identity=92.91% 
               

               
               29-156, LIB3629-009-Q1-K6-H7 LIB3629 Canis familiaris cDNA clone 
(gb|DN365019.1|), blast E-value=4.2039e-45, identity=92.97%

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_014417, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014417, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-612, gnl|bosTau2|chr18 (47199597-47198977)
               

               
               3-612, gnl|Hg17|chr19 (52416539-52415931)
               

               
               3-612, gnl|Mm7|chr7 (14079989-14080599)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-612, gnl|bosTau2|chr18 (47199597-47198977)
               

               
               3-612, gnl|Hg17|chr19 (52416539-52415931)
               

               
               3-612, gnl|Mm7|chr7 (14079989-14080599)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fty (0.17584)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	3-160, - strand, RNAz p=0.992555
	347-503, + strand, RNAz p=0.993904

	28-154, BP264926 Sugano cDNA library, muscle Homo sapiens cDNA clone (dbj\|BP264926.1\|), blast E-value=2e-40, identity=91.34%
	28-154, BY800084 Homo sapiens eye Homo sapiens cDNA clone HE5143.seq 5', (dbj\|BY800084.1\|), blast E-value=2e-40, identity=91.34%
	28-154, AGENCOURT_7833793 NIH_MGC_67 Homo sapiens cDNA clone IMAGE (gb\|BQ424506.1\|), blast E-value=2e-40, identity=91.34%
	28-154, UI-H-DP0-avq-k-04-0-UI.s1 NCI_CGAP_Fs1 Homo sapiens cDNA clone (gb\|CA443400.1\|), blast E-value=2e-40, identity=91.34%
	31-157, 969007 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK846502.1\|), blast E-value=1.96182e-44, identity=92.91%
	29-156, LIB3629-009-Q1-K6-H7 LIB3629 Canis familiaris cDNA clone (gb\|DN365019.1\|), blast E-value=4.2039e-45, identity=92.97%

	3-612, gnl\|bosTau2\|chr18 (47199597-47198977)
	3-612, gnl\|Hg17\|chr19 (52416539-52415931)
	3-612, gnl\|Mm7\|chr7 (14079989-14080599)