Non-Coding RNA Search

Ss1.1-rfty517b_i23.5

Sequence:


               
               TGGCCTCTGGTGGCCGGCCGAGGGATTGCCGGGGCCTGGCGGCCGCCAGGTGCCTCCCAT
TCCACCCACTGGCAGCCACTCCGCGGCTTTCCCTCTCTGTCCAGGGGGAGGAAAGGGGTG
CGTTTCACTGGGCCGAGGGGCCGGCTTGGCCTTCCTTGCCGCCGGGCGCCTCCTTCCCTC
TGGGGAGGCCTGTGCGTAGTGTAGATGGGGTGCACCAGCCTCCCGGCCTCTGAGGCTCGA
GTGTTACTTAGCCTTTTGCAGACTTTATTTTCATAGGTTGAGAAGTTTTGTACAGAGAAT
AAAAAAGGAAATTATTTATAATCTGGGCTTTGCTCCTTTGGGGAGGAAGTGCTTGCTGAC
CAGAGAGAAAATCCTTTGGGCCTTCCGTTTGTTCCCCAGCACCCAGGCAAAGGCCGAACA
AAATTTCCTCTTCCCCGTATTACGGGAGGCCCGGCCCTAGGGCCTCCAGCTGATCTGGAT
GCCACTGATGGTGTTTGGGCTCCATCCCTCTTAACTGAAGGGCCCTTGTGGTCTCAGCTG
TTCCTGCCTGCCTGGCCTCCCAGCTCCGACCCCCTCCAGGTCCCAGGGTGAGGTGGGACG
CCGGCTCCGAGTTCTTGGGGCTCTATTGTGACATGAGCTACCGTCTAGGTCTTCCTGTGT
GTCAGTCTTGTCCCCCTGGGCAGCTGTCTCACACGAGGCTGTGTGGCTGTGGGCTCCCGC
AGCCGTAAGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCTCTGGTGGCCGGCCGAGGGATTGCCGGGGCCTGGCGGCCGCCAGGTGCCTCCCAT
TCCACCCACTGGCAGCCACTCCGCGGCTTTCCCTCTCTGTCCAGGGGGAGGAAAGGGGTG
CGTTTCACTGGGCCGAGGGGCCGGCTTGGCCTTCCTTGCCGCCGGGCGCCTCCTTCCCTC
TGGGGAGGCCTGTGCGTAGTGTAGATGGGGTGCACCAGCCTCCCGGCCTCTGAGGCTCGA
GTGTTACTTAGCCTTTTGCAGACTTTATTTTCATAGGTTGAGAAGTTTTGTACAGAGAAT
AAAAAAGGAAATTATTTATAATCTGGGCTTTGCTCCTTTGGGGAGGAAGTGCTTGCTGAC
CAGAGAGAAAATCCTTTGGGCCTTCCGTTTGTTCCCCAGCACCCAGGCAAAGGCCGAACA
AAATTTCCTCTTCCCCGTATTACGGGAGGCCCGGCCCTAGGGCCTCCAGCTGATCTGGAT
GCCACTGATGGTGTTTGGGCTCCATCCCTCTTAACTGAAGGGCCCTTGTGGTCTCAGCTG
TTCCTGCCTGCCTGGCCTCCCAGCTCCGACCCCCTCCAGGTCCCAGGGTGAGGTGGGACG
CCGGCTCCGAGTTCTTGGGGCTCTATTGTGACATGAGCTACCGTCTAGGTCTTCCTGTGT
GTCAGTCTTGTCCCCCTGGGCAGCTGTCTCACACGAGGCTGTGTGGCTGTGGGCTCCCGC
AGCCGTAAGGGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               66-273, - strand, RNAz p=0.980061
               

               
               379-583, - strand, RNAz p=0.998509

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               66-273, - strand, RNAz p=0.980061
               

               
               379-583, - strand, RNAz p=0.998509

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-583, gnl|bosTau2|chr19 (24378753-24378182)
               

               
               1-583, gnl|Hg17|chr17 (17656458-17655820)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-583, gnl|bosTau2|chr19 (24378753-24378182)
               

               
               1-583, gnl|Hg17|chr17 (17656458-17655820)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               mas (0.42061)
               

               
               mcp (0.341297)
               

               
               cga (0.279096)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               mcp (0.341297)
               

               
               cga (0.279096)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	66-273, - strand, RNAz p=0.980061
	379-583, - strand, RNAz p=0.998509

	1-583, gnl\|bosTau2\|chr19 (24378753-24378182)
	1-583, gnl\|Hg17\|chr17 (17656458-17655820)

	mas (0.42061)
	mcp (0.341297)
	cga (0.279096)
	fty (0.17584)
	cli (0.152812)
	pla (0.133672)
	ute (0.132784)
	jca (0.11396)
	eje (0.0988338)