Ss1.1-rfty518b_a17.5.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GCCGCGGGCGCCGTGGATACAGCAGGAGGGGCAGGAGTATTGGGATCGGGAGACACAGAT CAGCAAGGACAACGCACAGACTTACCGAGTGAACCTGAACAACCTGCGCGGCTACTACAA CCAGAGCGAGGCCGGGTCTCACACCTTCCAGAACATGTACGGCTGCTACTTGGGACCAGA CGGGCTCCTCCTCCACGGGTACCATCAGTACGCCTACGACGGCGCCGATTACATCGCCCT GAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCAAGCGCAA GTGGGAGGCGAGTGGCTGGGCGGAGCAGGAGAGGAGCTACCTGCAGGGCCTGTGTGTGGA GTCGCTCCGCGAATACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAA GACACATGTGACCCGCCACCCCAGCTCTGACCTGGGGGTCACCTTGAGGTGCTGGGCCCT GGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCCAGGACCAGAGCCA GGACATGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGC CCTGGTGGTGCCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGCACGAGGGCCT GCAGGAGCCCCTCACCCTGAGATGGGACCCTCCTCAGCCCCCTGTCCCCATCGTGGGCAT CATTGTTGGCCTGGTTCTTGTCCTGGTCCCTGGAGCCATGGTGGCTGGAGTTGTGATCTG GAGGAAGACGCGCTCAGGCAGTGACAGTGCCCAGGGCTCTGATGTGTTTCTTCCAATGGA TCCTAGAGTGTG |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GCCGCGGGCGCCGTGGATACAGCAGGAGGGGCAGGAGTATTGGGATCGGGAGACACAGAT CAGCAAGGACAACGCACAGACTTACCGAGTGAACCTGAACAACCTGCGCGGCTACTACAA CCAGAGCGAGGCCGGGTCTCACACCTTCCAGAACATGTACGGCTGCTACTTGGGACCAGA CGGGCTCCTCCTCCACGGGTACCATCAGTACGCCTACGACGGCGCCGATTACATCGCCCT GAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCAAGCGCAA GTGGGAGGCGAGTGGCTGGGCGGAGCAGGAGAGGAGCTACCTGCAGGGCCTGTGTGTGGA GTCGCTCCGCGAATACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAA GACACATGTGACCCGCCACCCCAGCTCTGACCTGGGGGTCACCTTGAGGTGCTGGGCCCT GGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCCAGGACCAGAGCCA GGACATGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGC CCTGGTGGTGCCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGCACGAGGGCCT GCAGGAGCCCCTCACCCTGAGATGGGACCCTCCTCAGCCCCCTGTCCCCATCGTGGGCAT CATTGTTGGCCTGGTTCTTGTCCTGGTCCCTGGAGCCATGGTGGCTGGAGTTGTGATCTG GAGGAAGACGCGCTCAGGCAGTGACAGTGCCCAGGGCTCTGATGTGTTTCTTCCAATGGA TCCTAGAGTGTG |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
507-675, - strand, RNAz p=0.996054 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
507-675, - strand, RNAz p=0.996054 |
Aligned organism(s): 24 entry(ies) | More info |
Aligned organism(s): 24 entry(ies) | Help | Less info |
1-135, gnl|bosTau2|chr23 (20551275-20551409) | |
1-135, gnl|Hg17|chr6 (31432577-31432443) | |
1-135, gnl|Mm7|chr17 (33358864-33358998) | |
168-418, gnl|bosTau2|chr20 (36655627-36655873) | |
168-418, gnl|Hg17|chr6 (31347071-31346829) | |
168-418, gnl|Mm7|chr17 (32077846-32077606) | |
468-675, gnl|bosTau2|chr23 (24252946-24252736) | |
468-675, gnl|Hg17|chr6 (26200946-26201156) | |
468-675, gnl|Mm7|chr13 (23071884-23071674) | |
686-832, gnl|bosTau2|chr23 (23047794-23047647) | |
686-832, gnl|canFam2|chr12 (3938333-3938669) | |
686-832, gnl|dasNov1|scaffold_10933 (27709-28037) | |
686-832, gnl|echTel1|scaffold_220899 (9340-9001) | |
686-832, gnl|galGal2|chr16_random (271111-271395) | |
686-832, gnl|hg17|chr6 (30004005-30004367) | |
686-832, gnl|Hg17|chr6 (30004212-30004361) | |
686-832, gnl|loxAfr1|scaffold_35258 (6115-5789) | |
686-832, gnl|mm7|chr17 (35139276-35138931) | |
686-832, gnl|Mm7|chr17 (34472588-34472459) | |
686-832, gnl|monDom2|scaffold_42 (15844035-15844404) | |
686-832, gnl|oryCun1|scaffold_176700 (53005-53361) | |
686-832, gnl|panTro1|chr5 (30480794-30481160) | |
686-832, gnl|rheMac2|chr4 (30877587-30877274) | |
686-832, gnl|rn3|chr20 (1647265-1647597) |
Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-135, gnl|bosTau2|chr23 (20551275-20551409) | |
1-135, gnl|Hg17|chr6 (31432577-31432443) | |
1-135, gnl|Mm7|chr17 (33358864-33358998) | |
168-418, gnl|bosTau2|chr20 (36655627-36655873) | |
168-418, gnl|Hg17|chr6 (31347071-31346829) | |
168-418, gnl|Mm7|chr17 (32077846-32077606) | |
468-675, gnl|bosTau2|chr23 (24252946-24252736) | |
468-675, gnl|Hg17|chr6 (26200946-26201156) | |
468-675, gnl|Mm7|chr13 (23071884-23071674) | |
686-832, gnl|bosTau2|chr23 (23047794-23047647) | |
686-832, gnl|canFam2|chr12 (3938333-3938669) | |
686-832, gnl|dasNov1|scaffold_10933 (27709-28037) | |
686-832, gnl|echTel1|scaffold_220899 (9340-9001) | |
686-832, gnl|galGal2|chr16_random (271111-271395) | |
686-832, gnl|hg17|chr6 (30004005-30004367) | |
686-832, gnl|Hg17|chr6 (30004212-30004361) | |
686-832, gnl|loxAfr1|scaffold_35258 (6115-5789) | |
686-832, gnl|mm7|chr17 (35139276-35138931) | |
686-832, gnl|Mm7|chr17 (34472588-34472459) | |
686-832, gnl|monDom2|scaffold_42 (15844035-15844404) | |
686-832, gnl|oryCun1|scaffold_176700 (53005-53361) | |
686-832, gnl|panTro1|chr5 (30480794-30481160) | |
686-832, gnl|rheMac2|chr4 (30877587-30877274) | |
686-832, gnl|rn3|chr20 (1647265-1647597) |
Expressed library(ies): 6 entry(ies) | More info |
Expressed library(ies): 6 entry(ies) | Help | Less info |
fty (0.351679) | |
mcp (0.341297) | |
csp (0.322373) | |
cty (0.20816) | |
clu (0.119646) | |
jej (0.0989218) |
Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
fty (0.351679) | |
mcp (0.341297) | |
csp (0.322373) | |
cty (0.20816) | |
clu (0.119646) | |
jej (0.0989218) |