Non-Coding RNA Search

Ss1.1-rfty518b_c24.5

Sequence:


               
               CTCTGACTCAGTGAGTAAAATCTTGGGAAGTCAGGGGAAGGGCTGCCCACACTAAGGGGA
GCCCCAGGCTGCCTCAGCTGACTTTGTTCTCTGCAGTCCTCCCTACGCCCCATGCATCCC
CAAGCTCTGCATCCAGCCCCTGGACTGCTTGCCTCACCCCAGCTCCCTGTGCAGATGCAA
CCAGCAGGAAAGGTAAGCCCACCAGAATGCCTACATCACCAAGTTGAAAAAAGGACTGGG
TAGGACAGGTGGTCCCTGCCCCCCTTTTTCCCTCCTCCTCTGCCATGGCTGTCAGTCCCC
TGCGGGAGTAGAAGGAAGGGGAAGGGCGCGCACTGACAAAGCCCTCCTCTCATTACTGCT
GCCAGTCGGGCTTTGCAACCACCAGCCAGCCTGGCCCTCGGCTCCCCTTCATCCAGCACA
GCCAGAACCCGCGATTCTACCACAAGTGACCANCAG------------TCGCTCCCCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGACTCAGTGAGTAAAATCTTGGGAAGTCAGGGGAAGGGCTGCCCACACTAAGGGGA
GCCCCAGGCTGCCTCAGCTGACTTTGTTCTCTGCAGTCCTCCCTACGCCCCATGCATCCC
CAAGCTCTGCATCCAGCCCCTGGACTGCTTGCCTCACCCCAGCTCCCTGTGCAGATGCAA
CCAGCAGGAAAGGTAAGCCCACCAGAATGCCTACATCACCAAGTTGAAAAAAGGACTGGG
TAGGACAGGTGGTCCCTGCCCCCCTTTTTCCCTCCTCCTCTGCCATGGCTGTCAGTCCCC
TGCGGGAGTAGAAGGAAGGGGAAGGGCGCGCACTGACAAAGCCCTCCTCTCATTACTGCT
GCCAGTCGGGCTTTGCAACCACCAGCCAGCCTGGCCCTCGGCTCCCCTTCATCCAGCACA
GCCAGAACCCGCGATTCTACCACAAGTGACCANCAG------------TCGCTCCCCGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               214-329, - strand, RNAz p=0.787034

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               214-329, - strand, RNAz p=0.787034

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-455, gnl|bosTau2|chr19 (20563189-20562737)
               

               
               1-455, gnl|Hg17|chr17 (7157264-7156793)
               

               
               1-455, gnl|Mm7|chr11 (69997677-69998083)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-455, gnl|bosTau2|chr19 (20563189-20562737)
               

               
               1-455, gnl|Hg17|chr17 (7157264-7156793)
               

               
               1-455, gnl|Mm7|chr11 (69997677-69998083)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	1-455, gnl\|bosTau2\|chr19 (20563189-20562737)
	1-455, gnl\|Hg17\|chr17 (7157264-7156793)
	1-455, gnl\|Mm7\|chr11 (69997677-69998083)