Non-Coding RNA Search

Ss1.1-rfty518b_i11.5

Sequence:


               
               TGCGTGCTCACCCTGCCACGTTCCCTGCTCCTCGAGCCGCCCCGAGGGACCCCTGACCGC
AGCCAGGCTGACCCTGACTTTGCCTCCGAGGTGATGAGTGTGTCTGACTGGGAAGAGTTC
GACAACTCCAGCGAGGACTAGGGGCCTAGCTGTCGGGGGTTGGCAGCGGACCCGGGGCTG
CGGCTCCCTCACCCTGCCTTACCCAGCTTTTGTACCTGCCCTGGCAGGTGGGCGGTGTTC
TCTCAGCTCTGCAGGTCTGGCTGTGGATCACCCTGAGGTGGTGGGAAGTCTTCGAGATGG
GAGATCCGCAGCCTTTGAGGGAGTCCCCAGGCCCTCCCCTCCTTCAGCTGGGACAGGATG
TATCCACCGGCCATCCTGGCCTCCCTGCTCCCTGCTTCTGGTCCCTTCTGGTTTGAGAAG
GTGCCTCTCTCCCAAGGGACCTGGGGGCTGACATCCAGCGAGGGGCCGAGGCACATCTTG
CCCCTTCCATGGGCAGGGAGGGGCGGGAGAGCCTATCACTTGTGTAGCTGCTGAGGGCCC
GAGGGTCTGTGCTCCCAGGGGCCCAGGGGAGCAAAGATGGGGCACTGGCCTGAGGCCAGT
TCTAGTGATGAAAAGATGAACTGGGCTTTTCTGACTCCATGTTGTCAATAAATGAAATAA
ATCATCTTCCACAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGTGCTCACCCTGCCACGTTCCCTGCTCCTCGAGCCGCCCCGAGGGACCCCTGACCGC
AGCCAGGCTGACCCTGACTTTGCCTCCGAGGTGATGAGTGTGTCTGACTGGGAAGAGTTC
GACAACTCCAGCGAGGACTAGGGGCCTAGCTGTCGGGGGTTGGCAGCGGACCCGGGGCTG
CGGCTCCCTCACCCTGCCTTACCCAGCTTTTGTACCTGCCCTGGCAGGTGGGCGGTGTTC
TCTCAGCTCTGCAGGTCTGGCTGTGGATCACCCTGAGGTGGTGGGAAGTCTTCGAGATGG
GAGATCCGCAGCCTTTGAGGGAGTCCCCAGGCCCTCCCCTCCTTCAGCTGGGACAGGATG
TATCCACCGGCCATCCTGGCCTCCCTGCTCCCTGCTTCTGGTCCCTTCTGGTTTGAGAAG
GTGCCTCTCTCCCAAGGGACCTGGGGGCTGACATCCAGCGAGGGGCCGAGGCACATCTTG
CCCCTTCCATGGGCAGGGAGGGGCGGGAGAGCCTATCACTTGTGTAGCTGCTGAGGGCCC
GAGGGTCTGTGCTCCCAGGGGCCCAGGGGAGCAAAGATGGGGCACTGGCCTGAGGCCAGT
TCTAGTGATGAAAAGATGAACTGGGCTTTTCTGACTCCATGTTGTCAATAAATGAAATAA
ATCATCTTCCACAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-166, gnl|bosTau2|chr17 (44508464-44508297)
               

               
               1-166, gnl|Hg17|chr22 (19121054-19120832)
               

               
               1-166, gnl|Mm7|chr16 (17342384-17342544)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-166, gnl|bosTau2|chr17 (44508464-44508297)
               

               
               1-166, gnl|Hg17|chr22 (19121054-19120832)
               

               
               1-166, gnl|Mm7|chr16 (17342384-17342544)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ecc (0.23007)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

	1-166, gnl\|bosTau2\|chr17 (44508464-44508297)
	1-166, gnl\|Hg17\|chr22 (19121054-19120832)
	1-166, gnl\|Mm7\|chr16 (17342384-17342544)

	ecc (0.23007)
	fty (0.17584)
	duo (0.172801)
	hyp (0.142837)
	pty (0.142714)
	eep (0.122564)
	cly (0.120642)