Ss1.1-rfty518b_k21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAGCGCTGGCTCTGCCTCATTGGCTACGGCGTGCCCCTGGTCATCGTGGTTATCTCGG CCATTTTTGCAGCCACCTACAAGGAAGGCTATGGCAATGCCCTCTACTGCTGGTTGTCCC ACAAGCATGGCTTCCACTGGAGCTTCCAGGGACCTGTGACCTTCATCGTTTTGTGCAATG CTGTCATCTTTGTGACTACTGTCTGGAAACTCACTCAGAAATTTTCTGAAATCAACCCAG ACATAAAGAAATTAAAGAAAGCCAGGGTGCTGACCATCACAGCCATTGCCCAGCTCTTCG TGTTGGGCTGCACCTGGGTCTTCGGCCTGTTACTCTTTGACCCACGGAGCTGGGTCCTGT CCTACATCTTCACTATCCTCAACTGCCTGCAGGGCTTCTTCCTCTTCCTGCTATACTGCC TGCTCAACAAGAAGGTGAGAGAGGAGTACCGGAAGTGGGCCTGCATGGTCACCAGGAACA AGTATTCAGAGTTTGCCACAACCACATCTGCTTCCAGCTCCAGCCACAGTCAGACTCGGG CACTCAGGCCGTCGCAGTCCGGCATGTGAAGGCATAGTTCTGGCCAGGACAGCAGCTCCT GTGGCCTCAGCAGCTTTTGCACATGCTGAAGACCATCCTCTCCTCTCCCACTGTTCTGCT CCCTCTGCTCTCCTGCCTTGGTCCCCATATGCACCGTGGAAAGGAGGGTGGCAACTGCCA TGTGGCGCCAAACCCCAGAATAGCTGGCAAGGATGGAAAAGCTGGATCTACTAGGCCTGC TTCTGGCTGCCTCTCTGCTCCAGCCCCGCCAGGACCCAGGGTAGGAGCAGAAGCTGACCC ATGGCCGCAGCCCCTTGCCCTGGGTACACCAGGCCCAGACTGAGGGCTCCTGTGCCCAGC CTGGTCCTTTCCCTCCTGTGTCTTTGCTACAGAACAAGAGGTCAGGGTGCTGGGACTCAG CTTCCCAGTTAAGCTAAGACTGAGGTCAGGGGTGGGAGAAGGGCAAGGCCCTTCCTGGCC CCTCACTGAGGCTCACGGTACAGAAGCCCACCTGTCCCCAAGACAGAGGGTTATCACTGT TGTGAAGGTTGTGGACATTGCATAATGTTTTTTTTTTTTTTTTTTATCTGTATAAACCTG TCAGTGTTGACACTTAAAATTAAATATCATGCTGATATTGAAGGTGGCACTGCTTGCTGG CTAGGGGCTCGCTAACCAGGCCCTTGGTGTCCATGAAATACTGTGAGGTGACAGAACACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAGCGCTGGCTCTGCCTCATTGGCTACGGCGTGCCCCTGGTCATCGTGGTTATCTCGG CCATTTTTGCAGCCACCTACAAGGAAGGCTATGGCAATGCCCTCTACTGCTGGTTGTCCC ACAAGCATGGCTTCCACTGGAGCTTCCAGGGACCTGTGACCTTCATCGTTTTGTGCAATG CTGTCATCTTTGTGACTACTGTCTGGAAACTCACTCAGAAATTTTCTGAAATCAACCCAG ACATAAAGAAATTAAAGAAAGCCAGGGTGCTGACCATCACAGCCATTGCCCAGCTCTTCG TGTTGGGCTGCACCTGGGTCTTCGGCCTGTTACTCTTTGACCCACGGAGCTGGGTCCTGT CCTACATCTTCACTATCCTCAACTGCCTGCAGGGCTTCTTCCTCTTCCTGCTATACTGCC TGCTCAACAAGAAGGTGAGAGAGGAGTACCGGAAGTGGGCCTGCATGGTCACCAGGAACA AGTATTCAGAGTTTGCCACAACCACATCTGCTTCCAGCTCCAGCCACAGTCAGACTCGGG CACTCAGGCCGTCGCAGTCCGGCATGTGAAGGCATAGTTCTGGCCAGGACAGCAGCTCCT GTGGCCTCAGCAGCTTTTGCACATGCTGAAGACCATCCTCTCCTCTCCCACTGTTCTGCT CCCTCTGCTCTCCTGCCTTGGTCCCCATATGCACCGTGGAAAGGAGGGTGGCAACTGCCA TGTGGCGCCAAACCCCAGAATAGCTGGCAAGGATGGAAAAGCTGGATCTACTAGGCCTGC TTCTGGCTGCCTCTCTGCTCCAGCCCCGCCAGGACCCAGGGTAGGAGCAGAAGCTGACCC ATGGCCGCAGCCCCTTGCCCTGGGTACACCAGGCCCAGACTGAGGGCTCCTGTGCCCAGC CTGGTCCTTTCCCTCCTGTGTCTTTGCTACAGAACAAGAGGTCAGGGTGCTGGGACTCAG CTTCCCAGTTAAGCTAAGACTGAGGTCAGGGGTGGGAGAAGGGCAAGGCCCTTCCTGGCC CCTCACTGAGGCTCACGGTACAGAAGCCCACCTGTCCCCAAGACAGAGGGTTATCACTGT TGTGAAGGTTGTGGACATTGCATAATGTTTTTTTTTTTTTTTTTTATCTGTATAAACCTG TCAGTGTTGACACTTAAAATTAAATATCATGCTGATATTGAAGGTGGCACTGCTTGCTGG CTAGGGGCTCGCTAACCAGGCCCTTGGTGTCCATGAAATACTGTGAGGTGACAGAACACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 263-381, + strand, RNAz p=0.882544 | |
| 263-371, + strand, RNAz p=0.920575 | |
| 914-1222, - strand, RNAz p=0.996998 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 263-381, + strand, RNAz p=0.882544 | |
| 263-371, + strand, RNAz p=0.920575 | |
| 914-1222, - strand, RNAz p=0.996998 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 263-437, gnl|bosTau2|chr7 (7448767-7448593) | |
| 263-437, gnl|canFam2|chr20 (51207374-51207197) | |
| 263-437, gnl|danRer3|chr3 (4393000-4392819) | |
| 263-437, gnl|dasNov1|scaffold_168738 (4474-4289) | |
| 263-437, gnl|echTel1|scaffold_233638 (1695-1870) | |
| 263-437, gnl|fr1|chrUn (243514756-243514582) | |
| 263-437, gnl|hg17|chr19 (14378870-14379064) | |
| 263-437, gnl|Hg17|chr19 (14378870-14379044) | |
| 263-437, gnl|loxAfr1|scaffold_53062 (4749-4550) | |
| 263-437, gnl|mm7|chr8 (82302792-82302615) | |
| 263-437, gnl|Mm7|chr8 (82302790-82302616) | |
| 263-437, gnl|monDom2|scaffold_85 (5903840-5904025) | |
| 263-437, gnl|oryCun1|scaffold_176024 (771-594) | |
| 263-437, gnl|panTro1|chr20 (15017600-15017794) | |
| 263-437, gnl|rheMac2|chr19 (14107432-14107626) | |
| 263-437, gnl|rn3|chr19 (26112825-26113002) | |
| 263-437, gnl|tetNig1|chrUn_random (56103328-56103147) | |
| 263-437, gnl|xenTro1|scaffold_115 (575619-575421) | |
| 539-830, gnl|bosTau2|chr7 (7448312-7448040) | |
| 539-830, gnl|Hg17|chr19 (14379903-14380190) | |
| 539-830, gnl|Mm7|chr8 (82302330-82302074) | |
| 864-1256, gnl|bosTau2|chr7 (7448030-7447637) | |
| 864-1256, gnl|Hg17|chr19 (14380204-14380608) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 263-437, gnl|bosTau2|chr7 (7448767-7448593) | |
| 263-437, gnl|canFam2|chr20 (51207374-51207197) | |
| 263-437, gnl|danRer3|chr3 (4393000-4392819) | |
| 263-437, gnl|dasNov1|scaffold_168738 (4474-4289) | |
| 263-437, gnl|echTel1|scaffold_233638 (1695-1870) | |
| 263-437, gnl|fr1|chrUn (243514756-243514582) | |
| 263-437, gnl|hg17|chr19 (14378870-14379064) | |
| 263-437, gnl|Hg17|chr19 (14378870-14379044) | |
| 263-437, gnl|loxAfr1|scaffold_53062 (4749-4550) | |
| 263-437, gnl|mm7|chr8 (82302792-82302615) | |
| 263-437, gnl|Mm7|chr8 (82302790-82302616) | |
| 263-437, gnl|monDom2|scaffold_85 (5903840-5904025) | |
| 263-437, gnl|oryCun1|scaffold_176024 (771-594) | |
| 263-437, gnl|panTro1|chr20 (15017600-15017794) | |
| 263-437, gnl|rheMac2|chr19 (14107432-14107626) | |
| 263-437, gnl|rn3|chr19 (26112825-26113002) | |
| 263-437, gnl|tetNig1|chrUn_random (56103328-56103147) | |
| 263-437, gnl|xenTro1|scaffold_115 (575619-575421) | |
| 539-830, gnl|bosTau2|chr7 (7448312-7448040) | |
| 539-830, gnl|Hg17|chr19 (14379903-14380190) | |
| 539-830, gnl|Mm7|chr8 (82302330-82302074) | |
| 864-1256, gnl|bosTau2|chr7 (7448030-7447637) | |
| 864-1256, gnl|Hg17|chr19 (14380204-14380608) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| csp (0.483559) | |
| jca (0.22792) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| eru (0.120048) | |
| clu (0.119646) | |
| med (0.116252) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.483559) | |
| jca (0.22792) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| eru (0.120048) | |
| clu (0.119646) | |
| med (0.116252) |