Non-Coding RNA Search

Ss1.1-rfty519b_d17.5

Sequence:


               
               GGTTAGAATTGTCTTTTGATATTTATTTGCCTATTACTTATTTAGCTTCTTCGCAGCTAA
TGAATCAAATAGTTGGGATTTTGGGTGATTTTCCTTACCATTACCATTGTTTGTGAATGA
AAATTTTATTTCAGAAAATAACCAGTTCACCCCAGAAGCTAATCAGCTGCAGAAGGGAAG
AGGTAGAAGCCTGTGCAACAGCTGGGCTGTCTTCTGAGGAGCTTCTCAGGGCGTGGATCT
AGCAAGCTTGGGGCGCTGTCCAGCTGAAGCCCAGAAACCTGGTCTGCAGGACCCAGGAGC
CATGAGGGGAAAGGCCATGCTTCTGTTTCCTCCATGGACAAAGGAAGGACAAGAAGAGAA
GAGCCACTGTGTCCATGTCTAGAAGCAACTGTCAGAGGCAGAGTGGTGTGGCTGATGGAG
CCCTGAGTCGGGGTCAGGAGATGTGACCTCCAGCACTGGGTCTCTCTGCCGTCCACTAGT
GGGGTGACCCCGGGGGAAGTGACTTGGTCTCTCTGCTCCTCGGTTTTCTCATTTGTAAAA
CAGGGAATTCACTGCACAACCATTAACCCTATGTATATAGATACACATTCTCTCTCCACC
ACTTGCAGGGCTATAGGGAAATTGGCAACACTGTATATTGTGATGGGTTAAGCTTTTCTG
AGGAGCAGTAGATACGTGTGTAATGAGAATGATCTAAGGCTCTTTGCACCAGCCGGCTTG
GAGATCTCACTTCCCTAGAGGAAACCTTGAAGAGGAAAGGAAGGATGGGTCCATCTGGAT
TGATTTCACTTCAGTCAAATGCCCTTGCAGAGGGGACCAAATGTCTCAGCCAGTTTTACC
ATCTGTGACCCGCAGGGAGGCCACAGCCCCACTGAAAATGGGATGCACTCAGATGGTACA
GACACGGGAAATGCAGCACAGGGTAAACTGTGTGCACTGAAGACAGCAGGTAAACTGCAC
ACACACGAGATGAGACTGCCCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTAGAATTGTCTTTTGATATTTATTTGCCTATTACTTATTTAGCTTCTTCGCAGCTAA
TGAATCAAATAGTTGGGATTTTGGGTGATTTTCCTTACCATTACCATTGTTTGTGAATGA
AAATTTTATTTCAGAAAATAACCAGTTCACCCCAGAAGCTAATCAGCTGCAGAAGGGAAG
AGGTAGAAGCCTGTGCAACAGCTGGGCTGTCTTCTGAGGAGCTTCTCAGGGCGTGGATCT
AGCAAGCTTGGGGCGCTGTCCAGCTGAAGCCCAGAAACCTGGTCTGCAGGACCCAGGAGC
CATGAGGGGAAAGGCCATGCTTCTGTTTCCTCCATGGACAAAGGAAGGACAAGAAGAGAA
GAGCCACTGTGTCCATGTCTAGAAGCAACTGTCAGAGGCAGAGTGGTGTGGCTGATGGAG
CCCTGAGTCGGGGTCAGGAGATGTGACCTCCAGCACTGGGTCTCTCTGCCGTCCACTAGT
GGGGTGACCCCGGGGGAAGTGACTTGGTCTCTCTGCTCCTCGGTTTTCTCATTTGTAAAA
CAGGGAATTCACTGCACAACCATTAACCCTATGTATATAGATACACATTCTCTCTCCACC
ACTTGCAGGGCTATAGGGAAATTGGCAACACTGTATATTGTGATGGGTTAAGCTTTTCTG
AGGAGCAGTAGATACGTGTGTAATGAGAATGATCTAAGGCTCTTTGCACCAGCCGGCTTG
GAGATCTCACTTCCCTAGAGGAAACCTTGAAGAGGAAAGGAAGGATGGGTCCATCTGGAT
TGATTTCACTTCAGTCAAATGCCCTTGCAGAGGGGACCAAATGTCTCAGCCAGTTTTACC
ATCTGTGACCCGCAGGGAGGCCACAGCCCCACTGAAAATGGGATGCACTCAGATGGTACA
GACACGGGAAATGCAGCACAGGGTAAACTGTGTGCACTGAAGACAGCAGGTAAACTGCAC
ACACACGAGATGAGACTGCCCAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               37-808, gnl|bosTau2|chr1 (85584284-85585024)
               

               
               37-808, gnl|Hg17|chr3 (138211537-138212345)
               

               
               37-808, gnl|Mm7|chr9 (100102340-100101690)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-808, gnl|bosTau2|chr1 (85584284-85585024)
               

               
               37-808, gnl|Hg17|chr3 (138211537-138212345)
               

               
               37-808, gnl|Mm7|chr9 (100102340-100101690)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               fty (0.351679)
               

               
               thg (0.253582)
               

               
               med (0.232504)
               

               
               spl (0.143184)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               thg (0.253582)
               

               
               med (0.232504)
               

               
               spl (0.143184)

	37-808, gnl\|bosTau2\|chr1 (85584284-85585024)
	37-808, gnl\|Hg17\|chr3 (138211537-138212345)
	37-808, gnl\|Mm7\|chr9 (100102340-100101690)