Ss1.1-rfty519b_k24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAAAGGCAAGTATTATGCTGTTAACTACCCGCTCCGAGATGGGATGGATGACGAGTCCT ATGAGGCCATTTTCAAGCCGGTCATGTCCAAAGTAATGGAGATGTTCCAGCCTAGTGCGG TCGTCTTACAGTGTGGCTCTGACTCCCTGTCTGGGGATCGGTTAGGTTGCTTCAATTTGA CCATCAAAGGGCACGCCAAGTGTGTGGAGTTTGTGAAGAGCTTCAACCTACCTATGTTGA TGCTGGGAGGAGGTGGCTACACCATTCGTAATGTCGCCCGGTGCTGGACATATGAAACAG CTGTGGCCCTGGACACGGAGATCCCTAATGAGCTTCCGTACAACGACTACTTTGAATACT TCGGACCAGATTTCAAACTTCACATCAGTCCTTCCAATATGACTAACCAGAACACTAATG AGTACCTGGAAAAGATCAAACAGCGACTGTTTGAGAACCTGAGAATGCTGCCCCATGCAC CTGGGGTCCAAATGCAGGCCATTCCTGAGGATGCCATTCCAGAGGAGAGTGGCGATGAGG ATGAAGAAGACCCTGACAAGCGCA------------CCTCGGACAAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAAAGGCAAGTATTATGCTGTTAACTACCCGCTCCGAGATGGGATGGATGACGAGTCCT ATGAGGCCATTTTCAAGCCGGTCATGTCCAAAGTAATGGAGATGTTCCAGCCTAGTGCGG TCGTCTTACAGTGTGGCTCTGACTCCCTGTCTGGGGATCGGTTAGGTTGCTTCAATTTGA CCATCAAAGGGCACGCCAAGTGTGTGGAGTTTGTGAAGAGCTTCAACCTACCTATGTTGA TGCTGGGAGGAGGTGGCTACACCATTCGTAATGTCGCCCGGTGCTGGACATATGAAACAG CTGTGGCCCTGGACACGGAGATCCCTAATGAGCTTCCGTACAACGACTACTTTGAATACT TCGGACCAGATTTCAAACTTCACATCAGTCCTTCCAATATGACTAACCAGAACACTAATG AGTACCTGGAAAAGATCAAACAGCGACTGTTTGAGAACCTGAGAATGCTGCCCCATGCAC CTGGGGTCCAAATGCAGGCCATTCCTGAGGATGCCATTCCAGAGGAGAGTGGCGATGAGG ATGAAGAAGACCCTGACAAGCGCA------------CCTCGGACAAAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 181-330, gnl|bosTau2|chr2 (73590022-73590171) | |
| 181-330, gnl|canFam2|chr2 (71796722-71796546) | |
| 181-330, gnl|canFam2|chr2 (71796829-71796567) | |
| 181-330, gnl|danRer3|chr19 (62491478-62491630) | |
| 181-330, gnl|danRer3|chr19 (62491365-62491625) | |
| 181-330, gnl|dasNov1|scaffold_4608 (138056-138200) | |
| 181-330, gnl|dasNov1|scaffold_4608 (138024-138200) | |
| 181-330, gnl|echTel1|scaffold_299377 (6801-6982) | |
| 181-330, gnl|echTel1|scaffold_320671 (5848-6028) | |
| 181-330, gnl|fr1|chrUn (68547747-68547908) | |
| 181-330, gnl|fr1|chrUn (352435-352181) | |
| 181-330, gnl|galGal2|chr23 (4569031-4568859) | |
| 181-330, gnl|hg17|chr1 (32465446-32465618) | |
| 181-330, gnl|Hg17|chr1 (32465453-32465602) | |
| 181-330, gnl|hg17|chr10 (95888302-95888481) | |
| 181-330, gnl|loxAfr1|scaffold_40383 (11816-11988) | |
| 181-330, gnl|loxAfr1|scaffold_40383 (11711-11972) | |
| 181-330, gnl|mm7|chr17 (76788476-76788656) | |
| 181-330, gnl|mm7|chr4 (128963636-128963464) | |
| 181-330, gnl|Mm7|chr4 (128963627-128963478) | |
| 181-330, gnl|monDom2|scaffold_35 (24865678-24865494) | |
| 181-330, gnl|monDom2|scaffold_43 (7484224-7484055) | |
| 181-330, gnl|oryCun1|scaffold_118878 (7651-7475) | |
| 181-330, gnl|oryCun1|scaffold_211260 (14783-14612) | |
| 181-330, gnl|panTro1|chr1_random (60337946-60337774) | |
| 181-330, gnl|panTro1|chr8 (97643712-97643891) | |
| 181-330, gnl|rheMac2|chr1 (35096020-35096192) | |
| 181-330, gnl|rheMac2|chr9 (93604334-93604513) | |
| 181-330, gnl|rn3|chr5 (148685370-148685198) | |
| 181-330, gnl|rn3|chr9 (78594737-78594557) | |
| 181-330, gnl|tetNig1|chr10 (3099830-3099669) | |
| 181-330, gnl|tetNig1|chr21 (4907593-4907849) | |
| 181-330, gnl|xenTro1|scaffold_523 (766079-766249) | |
| 181-330, gnl|xenTro1|scaffold_523 (766053-766233) | |
| 440-568, gnl|bosTau2|chr2 (73590943-73591071) | |
| 440-568, gnl|canFam2|chr2 (71795815-71795684) | |
| 440-568, gnl|canFam2|chr2 (71795815-71795685) | |
| 440-568, gnl|danRer3|chr19 (62492152-62492280) | |
| 440-568, gnl|danRer3|chr19 (62492152-62492279) | |
| 440-568, gnl|dasNov1|scaffold_4608 (138311-138442) | |
| 440-568, gnl|dasNov1|scaffold_4608 (138311-138441) | |
| 440-568, gnl|echTel1|scaffold_320671 (6140-6269) | |
| 440-568, gnl|echTel1|scaffold_320671 (6140-6268) | |
| 440-568, gnl|fr1|chrUn (352070-351939) | |
| 440-568, gnl|fr1|chrUn (352070-351940) | |
| 440-568, gnl|galGal2|chr23 (4568185-4568055) | |
| 440-568, gnl|Hg17|chr1 (32466370-32466498) | |
| 440-568, gnl|hg17|chr10 (95888591-95888718) | |
| 440-568, gnl|hg17|chr11 (113960276-113960405) | |
| 440-568, gnl|loxAfr1|scaffold_40383 (12743-12874) | |
| 440-568, gnl|loxAfr1|scaffold_40383 (12743-12873) | |
| 440-568, gnl|mm7|chr17 (76788767-76788898) | |
| 440-568, gnl|mm7|chr17 (76788767-76788897) | |
| 440-568, gnl|Mm7|chr4 (128962570-128962442) | |
| 440-568, gnl|monDom2|scaffold_35 (24865383-24865252) | |
| 440-568, gnl|monDom2|scaffold_35 (24865383-24865253) | |
| 440-568, gnl|oryCun1|scaffold_118878 (7366-7236) | |
| 440-568, gnl|oryCun1|scaffold_118878 (7366-7237) | |
| 440-568, gnl|panTro1|chr8 (97644001-97644128) | |
| 440-568, gnl|panTro1|chr9 (115961366-115961495) | |
| 440-568, gnl|rheMac2|chr14 (113048574-113048702) | |
| 440-568, gnl|rheMac2|chr9 (93604623-93604750) | |
| 440-568, gnl|rn3|chr9 (78594446-78594315) | |
| 440-568, gnl|rn3|chr9 (78594446-78594316) | |
| 440-568, gnl|tetNig1|chr21 (4907960-4908091) | |
| 440-568, gnl|tetNig1|chr21 (4907960-4908090) | |
| 440-568, gnl|xenTro1|scaffold_523 (767248-767378) | |
| 440-568, gnl|xenTro1|scaffold_523 (767248-767378) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 181-330, gnl|bosTau2|chr2 (73590022-73590171) | |
| 181-330, gnl|canFam2|chr2 (71796722-71796546) | |
| 181-330, gnl|canFam2|chr2 (71796829-71796567) | |
| 181-330, gnl|danRer3|chr19 (62491478-62491630) | |
| 181-330, gnl|danRer3|chr19 (62491365-62491625) | |
| 181-330, gnl|dasNov1|scaffold_4608 (138056-138200) | |
| 181-330, gnl|dasNov1|scaffold_4608 (138024-138200) | |
| 181-330, gnl|echTel1|scaffold_299377 (6801-6982) | |
| 181-330, gnl|echTel1|scaffold_320671 (5848-6028) | |
| 181-330, gnl|fr1|chrUn (68547747-68547908) | |
| 181-330, gnl|fr1|chrUn (352435-352181) | |
| 181-330, gnl|galGal2|chr23 (4569031-4568859) | |
| 181-330, gnl|hg17|chr1 (32465446-32465618) | |
| 181-330, gnl|Hg17|chr1 (32465453-32465602) | |
| 181-330, gnl|hg17|chr10 (95888302-95888481) | |
| 181-330, gnl|loxAfr1|scaffold_40383 (11816-11988) | |
| 181-330, gnl|loxAfr1|scaffold_40383 (11711-11972) | |
| 181-330, gnl|mm7|chr17 (76788476-76788656) | |
| 181-330, gnl|mm7|chr4 (128963636-128963464) | |
| 181-330, gnl|Mm7|chr4 (128963627-128963478) | |
| 181-330, gnl|monDom2|scaffold_35 (24865678-24865494) | |
| 181-330, gnl|monDom2|scaffold_43 (7484224-7484055) | |
| 181-330, gnl|oryCun1|scaffold_118878 (7651-7475) | |
| 181-330, gnl|oryCun1|scaffold_211260 (14783-14612) | |
| 181-330, gnl|panTro1|chr1_random (60337946-60337774) | |
| 181-330, gnl|panTro1|chr8 (97643712-97643891) | |
| 181-330, gnl|rheMac2|chr1 (35096020-35096192) | |
| 181-330, gnl|rheMac2|chr9 (93604334-93604513) | |
| 181-330, gnl|rn3|chr5 (148685370-148685198) | |
| 181-330, gnl|rn3|chr9 (78594737-78594557) | |
| 181-330, gnl|tetNig1|chr10 (3099830-3099669) | |
| 181-330, gnl|tetNig1|chr21 (4907593-4907849) | |
| 181-330, gnl|xenTro1|scaffold_523 (766079-766249) | |
| 181-330, gnl|xenTro1|scaffold_523 (766053-766233) | |
| 440-568, gnl|bosTau2|chr2 (73590943-73591071) | |
| 440-568, gnl|canFam2|chr2 (71795815-71795684) | |
| 440-568, gnl|canFam2|chr2 (71795815-71795685) | |
| 440-568, gnl|danRer3|chr19 (62492152-62492280) | |
| 440-568, gnl|danRer3|chr19 (62492152-62492279) | |
| 440-568, gnl|dasNov1|scaffold_4608 (138311-138442) | |
| 440-568, gnl|dasNov1|scaffold_4608 (138311-138441) | |
| 440-568, gnl|echTel1|scaffold_320671 (6140-6269) | |
| 440-568, gnl|echTel1|scaffold_320671 (6140-6268) | |
| 440-568, gnl|fr1|chrUn (352070-351939) | |
| 440-568, gnl|fr1|chrUn (352070-351940) | |
| 440-568, gnl|galGal2|chr23 (4568185-4568055) | |
| 440-568, gnl|Hg17|chr1 (32466370-32466498) | |
| 440-568, gnl|hg17|chr10 (95888591-95888718) | |
| 440-568, gnl|hg17|chr11 (113960276-113960405) | |
| 440-568, gnl|loxAfr1|scaffold_40383 (12743-12874) | |
| 440-568, gnl|loxAfr1|scaffold_40383 (12743-12873) | |
| 440-568, gnl|mm7|chr17 (76788767-76788898) | |
| 440-568, gnl|mm7|chr17 (76788767-76788897) | |
| 440-568, gnl|Mm7|chr4 (128962570-128962442) | |
| 440-568, gnl|monDom2|scaffold_35 (24865383-24865252) | |
| 440-568, gnl|monDom2|scaffold_35 (24865383-24865253) | |
| 440-568, gnl|oryCun1|scaffold_118878 (7366-7236) | |
| 440-568, gnl|oryCun1|scaffold_118878 (7366-7237) | |
| 440-568, gnl|panTro1|chr8 (97644001-97644128) | |
| 440-568, gnl|panTro1|chr9 (115961366-115961495) | |
| 440-568, gnl|rheMac2|chr14 (113048574-113048702) | |
| 440-568, gnl|rheMac2|chr9 (93604623-93604750) | |
| 440-568, gnl|rn3|chr9 (78594446-78594315) | |
| 440-568, gnl|rn3|chr9 (78594446-78594316) | |
| 440-568, gnl|tetNig1|chr21 (4907960-4908091) | |
| 440-568, gnl|tetNig1|chr21 (4907960-4908090) | |
| 440-568, gnl|xenTro1|scaffold_523 (767248-767378) | |
| 440-568, gnl|xenTro1|scaffold_523 (767248-767378) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| pgl (0.118483) |