Non-Coding RNA Search

Ss1.1-rfty519b_l18.5

Sequence:


               
               ACCATGCCCCCGAACTGGTCATCCTGTGGGAATCTCATCCCAAGGAGGGTTGATGAAATT
GTCGTGTGAAGGCCTCCTGAGGCAGGCCTCTGCCTGCTCTCCTCCAGTGCTCAGCAAGCT
GCTCCCTCCTGAGGCTGCACCTCTGGCTCATGCCCTGAGTACCATCAATGCTGTGTCTGT
GGCTGTGGTGAACCTGCAGTACCGAGGAGCTCGTCTGCCTGTCCAGGCGGATTTGGGCAT
TTGGTGCCATCCTCAGAAGACCCAGTCATCCTGGGAATCGTGTATGACTCAGTTGCTTTC
CCTGAGCAGGATGGAAGCCCTTCTGGCCTCAGAGTGACTGTGAGAGAAGACAGCTTTGCT
TAGTGGGCATTTATTTCCAAAGGGCTCCTCTGTGCCCCATCGTAGGTAAGGCCAGGCTGG
TCAGTGCCATATTCCTTCCTTAGGTGATGCTGGGAGGTTCCTGGTTACAGACACTAGAAG
CCAGAAGCTGTGTCTTATCCCAGGAGCTGTTCCAACAGGAGGCAGAGAAAGCAGTTGCCA
CACAGTTAGGTTTAAAGGAGCCACCAAGTCACTGCTTGGTCCATCTACACAAGGTGAGTT
GGTAACATAAGGTAAGCATTCCTCAGCTATCCACTGAAGGCCTTGGAGACAGGGACTGGT
GTATATGTCATTGCTGGGAGGTTCCTGGTTACAGACACTAGAAGCCAGCCCTGTATCCAT
CCCCTCTTCTCTCCCCAGAACTGTATCCCCCAGTATACATTAGGCCACTGGCAAAAACTG
CGTAAGTTGGGAAAGCAGCTGGGCTGAGGAGAACCATGGAAATAGACCCCCCAGCTATAA
CATATATCTTTTCCTTCCAGAGTCAGCTACCCAATACCTGGCTGCTCAGAAGCTGCCCTT
GACTCTGGCTGGAGCCTCCTATGAGGGGGTTGCTGTCAATGACTGTATAGAGAGTGGGCG
CCAGGCAGCAGCCCAGGTCCTGGGCACAGAGTCGAATATTTGATCCTCAATTTCCACCTC
TTCCTGCCCCAGCTGGCAGGGATTCTCTCACCTGCAAAAATTAAAGTTGCTGGAGCGTGA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCATGCCCCCGAACTGGTCATCCTGTGGGAATCTCATCCCAAGGAGGGTTGATGAAATT
GTCGTGTGAAGGCCTCCTGAGGCAGGCCTCTGCCTGCTCTCCTCCAGTGCTCAGCAAGCT
GCTCCCTCCTGAGGCTGCACCTCTGGCTCATGCCCTGAGTACCATCAATGCTGTGTCTGT
GGCTGTGGTGAACCTGCAGTACCGAGGAGCTCGTCTGCCTGTCCAGGCGGATTTGGGCAT
TTGGTGCCATCCTCAGAAGACCCAGTCATCCTGGGAATCGTGTATGACTCAGTTGCTTTC
CCTGAGCAGGATGGAAGCCCTTCTGGCCTCAGAGTGACTGTGAGAGAAGACAGCTTTGCT
TAGTGGGCATTTATTTCCAAAGGGCTCCTCTGTGCCCCATCGTAGGTAAGGCCAGGCTGG
TCAGTGCCATATTCCTTCCTTAGGTGATGCTGGGAGGTTCCTGGTTACAGACACTAGAAG
CCAGAAGCTGTGTCTTATCCCAGGAGCTGTTCCAACAGGAGGCAGAGAAAGCAGTTGCCA
CACAGTTAGGTTTAAAGGAGCCACCAAGTCACTGCTTGGTCCATCTACACAAGGTGAGTT
GGTAACATAAGGTAAGCATTCCTCAGCTATCCACTGAAGGCCTTGGAGACAGGGACTGGT
GTATATGTCATTGCTGGGAGGTTCCTGGTTACAGACACTAGAAGCCAGCCCTGTATCCAT
CCCCTCTTCTCTCCCCAGAACTGTATCCCCCAGTATACATTAGGCCACTGGCAAAAACTG
CGTAAGTTGGGAAAGCAGCTGGGCTGAGGAGAACCATGGAAATAGACCCCCCAGCTATAA
CATATATCTTTTCCTTCCAGAGTCAGCTACCCAATACCTGGCTGCTCAGAAGCTGCCCTT
GACTCTGGCTGGAGCCTCCTATGAGGGGGTTGCTGTCAATGACTGTATAGAGAGTGGGCG
CCAGGCAGCAGCCCAGGTCCTGGGCACAGAGTCGAATATTTGATCCTCAATTTCCACCTC
TTCCTGCCCCAGCTGGCAGGGATTCTCTCACCTGCAAAAATTAAAGTTGCTGGAGCGTGA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               308-426, + strand, RNAz p=0.773031

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-426, + strand, RNAz p=0.773031

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               294-423, - strand, RNAmicro p=0.998609

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               294-423, - strand, RNAmicro p=0.998609

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-227, gnl|bosTau2|chr3 (7623880-7623658)
               

               
               1-227, gnl|Hg17|chr1 (157952666-157952888)
               


               
               229-484, gnl|bosTau2|chr3 (7623575-7623325)
               

               
               229-484, gnl|Hg17|chr1 (157953272-157953523)
               

               
               229-484, gnl|Mm7|chr1 (171247897-171247649)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-227, gnl|bosTau2|chr3 (7623880-7623658)
               

               
               1-227, gnl|Hg17|chr1 (157952666-157952888)
               


               
               229-484, gnl|bosTau2|chr3 (7623575-7623325)
               

               
               229-484, gnl|Hg17|chr1 (157953272-157953523)
               

               
               229-484, gnl|Mm7|chr1 (171247897-171247649)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               cbr (0.127975)
               

               
               clu (0.119646)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               cbr (0.127975)
               

               
               clu (0.119646)

	1-227, gnl\|bosTau2\|chr3 (7623880-7623658)
	1-227, gnl\|Hg17\|chr1 (157952666-157952888)

	229-484, gnl\|bosTau2\|chr3 (7623575-7623325)
	229-484, gnl\|Hg17\|chr1 (157953272-157953523)
	229-484, gnl\|Mm7\|chr1 (171247897-171247649)