Ss1.1-rfty520b_c22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGGCCTGGGCGCTGGCGAAGCCTCCGCGCGAGCGCGAGGAAGAAGGATGCCGGTGGTG GCTCGGAGCATGAGGGATCCTGACGTGAATCCGTGCTTGTCGATGGCGCGGAGCATGAGG GATCCTGACGTGAATCCGTGCTTGTCGGAATCTGACGCTTCTGCCAGATGTTTGGATGAA AATAACTATGACAAGGAAAGGTGTTCCACTCACTTCTTGAAGTACAAGAACTGCCGGAAG TTCTGGAATTCTGTCATGCTCCAGAGAAGGCAGAACGGAGTGAAGCCACCTATGCCCACG GCCGCAGAAAGAGACGAGATCTTGGGAGCACTGGGAAAGATGCCCTATTGAGCGTTTGCA TTAAAATGGTTTATTTAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGGCCTGGGCGCTGGCGAAGCCTCCGCGCGAGCGCGAGGAAGAAGGATGCCGGTGGTG GCTCGGAGCATGAGGGATCCTGACGTGAATCCGTGCTTGTCGATGGCGCGGAGCATGAGG GATCCTGACGTGAATCCGTGCTTGTCGGAATCTGACGCTTCTGCCAGATGTTTGGATGAA AATAACTATGACAAGGAAAGGTGTTCCACTCACTTCTTGAAGTACAAGAACTGCCGGAAG TTCTGGAATTCTGTCATGCTCCAGAGAAGGCAGAACGGAGTGAAGCCACCTATGCCCACG GCCGCAGAAAGAGACGAGATCTTGGGAGCACTGGGAAAGATGCCCTATTGAGCGTTTGCA TTAAAATGGTTTATTTAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 246-394, gnl|bosTau2|chr14 (11547145-11546997) | |
| 246-394, gnl|canFam2|chr29 (10619184-10619298) | |
| 246-394, gnl|canFam2|chr29 (10619317-10619186) | |
| 246-394, gnl|danRer3|chr19 (33622076-33621959) | |
| 246-394, gnl|dasNov1|scaffold_4509 (69056-68938) | |
| 246-394, gnl|dasNov1|scaffold_4509 (68919-69054) | |
| 246-394, gnl|echTel1|scaffold_180891 (7449-7567) | |
| 246-394, gnl|echTel1|scaffold_87115 (433-293) | |
| 246-394, gnl|galGal2|chr2 (110481002-110481121) | |
| 246-394, gnl|hg17|chr15 (72560369-72560519) | |
| 246-394, gnl|hg17|chr8 (57292442-57292560) | |
| 246-394, gnl|Hg17|chr8 (57292443-57292591) | |
| 246-394, gnl|loxAfr1|scaffold_15177 (4493-4611) | |
| 246-394, gnl|loxAfr1|scaffold_28214 (30298-30447) | |
| 246-394, gnl|mm7|chr4 (3870533-3870651) | |
| 246-394, gnl|Mm7|chr4 (3870534-3870705) | |
| 246-394, gnl|mm7|chr9 (57926372-57926249) | |
| 246-394, gnl|monDom2|scaffold_4 (107834117-107833995) | |
| 246-394, gnl|oryCun1|scaffold_205708 (119732-119868) | |
| 246-394, gnl|oryCun1|scaffold_48811 (1166-1284) | |
| 246-394, gnl|panTro1|chr16_random (21684152-21684302) | |
| 246-394, gnl|panTro1|chr7 (59006355-59006473) | |
| 246-394, gnl|rheMac2|chr7 (53276492-53276642) | |
| 246-394, gnl|rheMac2|chr8 (58822602-58822720) | |
| 246-394, gnl|rn3|chr5 (17282492-17282610) | |
| 246-394, gnl|rn3|chr8 (61695521-61695398) | |
| 246-394, gnl|xenTro1|scaffold_8 (2812011-2812123) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 246-394, gnl|bosTau2|chr14 (11547145-11546997) | |
| 246-394, gnl|canFam2|chr29 (10619184-10619298) | |
| 246-394, gnl|canFam2|chr29 (10619317-10619186) | |
| 246-394, gnl|danRer3|chr19 (33622076-33621959) | |
| 246-394, gnl|dasNov1|scaffold_4509 (69056-68938) | |
| 246-394, gnl|dasNov1|scaffold_4509 (68919-69054) | |
| 246-394, gnl|echTel1|scaffold_180891 (7449-7567) | |
| 246-394, gnl|echTel1|scaffold_87115 (433-293) | |
| 246-394, gnl|galGal2|chr2 (110481002-110481121) | |
| 246-394, gnl|hg17|chr15 (72560369-72560519) | |
| 246-394, gnl|hg17|chr8 (57292442-57292560) | |
| 246-394, gnl|Hg17|chr8 (57292443-57292591) | |
| 246-394, gnl|loxAfr1|scaffold_15177 (4493-4611) | |
| 246-394, gnl|loxAfr1|scaffold_28214 (30298-30447) | |
| 246-394, gnl|mm7|chr4 (3870533-3870651) | |
| 246-394, gnl|Mm7|chr4 (3870534-3870705) | |
| 246-394, gnl|mm7|chr9 (57926372-57926249) | |
| 246-394, gnl|monDom2|scaffold_4 (107834117-107833995) | |
| 246-394, gnl|oryCun1|scaffold_205708 (119732-119868) | |
| 246-394, gnl|oryCun1|scaffold_48811 (1166-1284) | |
| 246-394, gnl|panTro1|chr16_random (21684152-21684302) | |
| 246-394, gnl|panTro1|chr7 (59006355-59006473) | |
| 246-394, gnl|rheMac2|chr7 (53276492-53276642) | |
| 246-394, gnl|rheMac2|chr8 (58822602-58822720) | |
| 246-394, gnl|rn3|chr5 (17282492-17282610) | |
| 246-394, gnl|rn3|chr8 (61695521-61695398) | |
| 246-394, gnl|xenTro1|scaffold_8 (2812011-2812123) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| hyp (0.42851) | |
| sto (0.359648) | |
| fty (0.351679) | |
| che (0.272628) | |
| jca (0.22792) | |
| mas (0.210305) | |
| col (0.195008) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| nbm (0.0993246) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.42851) | |
| sto (0.359648) | |
| fty (0.351679) | |
| che (0.272628) | |
| jca (0.22792) | |
| mas (0.210305) | |
| col (0.195008) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| nbm (0.0993246) |