Ss1.1-rfty520b_h17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGATGTAGAAAATGGAGAATTCCTTTGTCCTCTTTGTGAATGCTTGAGTAATACTGTTA TTCCTCTGCTGCTTCCTCCAAGAAATATTTTTAATAGCAGGTTAAATTTTTCAGACCAAC CAAATCTGACTCAGTGGATTAGAACAATATCTCAGCAAATAAAAGCATTACAGGTTCTTA GGAAAGAAGAAAGTACTCCTAATATTGCCTCATCAAAGAATTTAGAAAATATGGATGAAT TGCAGCTCCCTGAAGGATTTAGGCCCAATTTTCATCCTAAGAACCCTTATTCTGAGAGCA TAAAAGAAATGCTAACAACATTTGGAACCGCTACTTATAAAGTGGGATTAAAGGTTCATC CAAATGAGGAGGATCCCCGCGTGCCCATAATGTGCTGGGGTAGTTGTGCGTACACCATCC AAAGCATAGAAAGAATTTTAAGCGATGAAGACAAACCGTTATTTGGTCCTTTTCCTTGCA GACTGGATGACTGTCTTAGGTCGCTAACAAGATTTGCTGCAGCACATTGGACAGTGGCCT CCCTTTCAGTGGTGCAAGGACACTTCTGTAAACTTTTTGCATCACTGGTGCCTGGTGACA GCTCTGGAGACCTTCCATGCATTTTAGATATCGACATGTTTCATTTATTGGTGGGCTTGG TGCTCTCCTTCCCTGCGCTGCATTGTCAGGACTTTTCAGGGATCAGCCTTGGCACTGGAG ACCTGCACATTTTCCATCTGGTTACTATGGCACACATCGTACAGATCTTACTTACCTCAT GTACAGAAGAGAATGGCATGGATCAAGAAAATGCTGGTGGGGAAGAAGAATTAGCAGTTC TTTCTCTGTATAAAACACTTCACCAGTGTACAGGAAGTGCCTTGAAAGAAATACCCTCCG GTTGGCATCTGTGGAGGAATGTCAGAGCTGGAATCATGCCATTTCTGAGATGTTCTGCTT TGTTTTTCCATTACTTAAATGGAGTTCCTTCTCCACCCGAAATTCAAGCTTCTGGAACCA GCCATTTTGAACAGTTATGTAACTATCTTTCCCTGCCAAACAACCTCATTTGCCTTTTTC AAGAAAATAAGGAGATAATGAAATTACTAATTGAAAGTTGGTGTCATAACACTGAAGTTA AAAGATACATGGAAGGTGAAAGAGATGCTATAAGCTATCCAAGAGAATCTAACAAACTAA TAGACCTTCCAGAGGATTACAGCAGCCTCATTAATCAAGCATCTAATTTCTCGTGCCCCA AATCAGGTGGTGACAAGAGCAGAGCCCCAACTCTGTGCCTTGTATGTGGAACCCTGCTCT GTTCCCAGAGCTACTGCTGTCAGACAGAACTGGAAGGGGAGGATGTGGGAGCCTGTACCG CTCACACCTACTCCTGTGGTTCTGGGGTGGGCGTCTTCCTGAGAGTACGGGAATGTCAAG TGCTATTTTTAGCTGGCAAAACCAAAGGCTGTTTTTATTCTCCTCCTTACCTTGATGACT ATGGGGAGACTGACCAGGGACTCATGTTCATTTGAGGGAAATGGGGAGCCTTGTTTCTAC ACATCTCGAATTTGGCTCCTGCTAACTCTGCCCATTCGTCCATTATCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGATGTAGAAAATGGAGAATTCCTTTGTCCTCTTTGTGAATGCTTGAGTAATACTGTTA TTCCTCTGCTGCTTCCTCCAAGAAATATTTTTAATAGCAGGTTAAATTTTTCAGACCAAC CAAATCTGACTCAGTGGATTAGAACAATATCTCAGCAAATAAAAGCATTACAGGTTCTTA GGAAAGAAGAAAGTACTCCTAATATTGCCTCATCAAAGAATTTAGAAAATATGGATGAAT TGCAGCTCCCTGAAGGATTTAGGCCCAATTTTCATCCTAAGAACCCTTATTCTGAGAGCA TAAAAGAAATGCTAACAACATTTGGAACCGCTACTTATAAAGTGGGATTAAAGGTTCATC CAAATGAGGAGGATCCCCGCGTGCCCATAATGTGCTGGGGTAGTTGTGCGTACACCATCC AAAGCATAGAAAGAATTTTAAGCGATGAAGACAAACCGTTATTTGGTCCTTTTCCTTGCA GACTGGATGACTGTCTTAGGTCGCTAACAAGATTTGCTGCAGCACATTGGACAGTGGCCT CCCTTTCAGTGGTGCAAGGACACTTCTGTAAACTTTTTGCATCACTGGTGCCTGGTGACA GCTCTGGAGACCTTCCATGCATTTTAGATATCGACATGTTTCATTTATTGGTGGGCTTGG TGCTCTCCTTCCCTGCGCTGCATTGTCAGGACTTTTCAGGGATCAGCCTTGGCACTGGAG ACCTGCACATTTTCCATCTGGTTACTATGGCACACATCGTACAGATCTTACTTACCTCAT GTACAGAAGAGAATGGCATGGATCAAGAAAATGCTGGTGGGGAAGAAGAATTAGCAGTTC TTTCTCTGTATAAAACACTTCACCAGTGTACAGGAAGTGCCTTGAAAGAAATACCCTCCG GTTGGCATCTGTGGAGGAATGTCAGAGCTGGAATCATGCCATTTCTGAGATGTTCTGCTT TGTTTTTCCATTACTTAAATGGAGTTCCTTCTCCACCCGAAATTCAAGCTTCTGGAACCA GCCATTTTGAACAGTTATGTAACTATCTTTCCCTGCCAAACAACCTCATTTGCCTTTTTC AAGAAAATAAGGAGATAATGAAATTACTAATTGAAAGTTGGTGTCATAACACTGAAGTTA AAAGATACATGGAAGGTGAAAGAGATGCTATAAGCTATCCAAGAGAATCTAACAAACTAA TAGACCTTCCAGAGGATTACAGCAGCCTCATTAATCAAGCATCTAATTTCTCGTGCCCCA AATCAGGTGGTGACAAGAGCAGAGCCCCAACTCTGTGCCTTGTATGTGGAACCCTGCTCT GTTCCCAGAGCTACTGCTGTCAGACAGAACTGGAAGGGGAGGATGTGGGAGCCTGTACCG CTCACACCTACTCCTGTGGTTCTGGGGTGGGCGTCTTCCTGAGAGTACGGGAATGTCAAG TGCTATTTTTAGCTGGCAAAACCAAAGGCTGTTTTTATTCTCCTCCTTACCTTGATGACT ATGGGGAGACTGACCAGGGACTCATGTTCATTTGAGGGAAATGGGGAGCCTTGTTTCTAC ACATCTCGAATTTGGCTCCTGCTAACTCTGCCCATTCGTCCATTATCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 268-363, + strand, RNAz p=0.782375 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 268-363, + strand, RNAz p=0.782375 |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 87-204, gnl|bosTau2|chr23 (17022813-17022930) | |
| 87-204, gnl|canFam2|chr12 (14276320-14276426) | |
| 87-204, gnl|echTel1|scaffold_312705 (4090-3986) | |
| 87-204, gnl|galGal2|chr3 (19362356-19362463) | |
| 87-204, gnl|hg17|chr6 (42741111-42741217) | |
| 87-204, gnl|Hg17|chr6 (42741114-42741231) | |
| 87-204, gnl|loxAfr1|scaffold_22175 (47671-47565) | |
| 87-204, gnl|mm7|chr17 (45082921-45082815) | |
| 87-204, gnl|Mm7|chr17 (45082916-45082799) | |
| 87-204, gnl|monDom2|scaffold_0 (198980865-198980752) | |
| 87-204, gnl|panTro1|chr5 (43325604-43325710) | |
| 87-204, gnl|rheMac2|chr4 (42541316-42541422) | |
| 87-204, gnl|rn3|chr9 (9219894-9219973) | |
| 87-204, gnl|xenTro1|scaffold_68 (2018744-2018846) | |
| 268-440, gnl|bosTau2|chr23 (17026585-17026758) | |
| 268-440, gnl|canFam2|chr12 (14279640-14279832) | |
| 268-440, gnl|danRer3|chr13 (1512020-1511831) | |
| 268-440, gnl|dasNov1|scaffold_19493 (44128-44307) | |
| 268-440, gnl|echTel1|scaffold_312705 (1104-917) | |
| 268-440, gnl|fr1|chrUn (94737522-94737705) | |
| 268-440, gnl|galGal2|chr3 (19363516-19363710) | |
| 268-440, gnl|hg17|chr6 (42745782-42745974) | |
| 268-440, gnl|Hg17|chr6 (42745795-42745968) | |
| 268-440, gnl|loxAfr1|scaffold_22175 (44339-44147) | |
| 268-440, gnl|mm7|chr17 (45077403-45077212) | |
| 268-440, gnl|Mm7|chr17 (45077388-45077216) | |
| 268-440, gnl|monDom2|scaffold_0 (198978045-198977862) | |
| 268-440, gnl|oryCun1|scaffold_214881 (10141-10333) | |
| 268-440, gnl|panTro1|chr5 (43330658-43330850) | |
| 268-440, gnl|rheMac2|chr4 (42546228-42546420) | |
| 268-440, gnl|rn3|chr9 (9223748-9223935) | |
| 268-440, gnl|tetNig1|chr17 (7863225-7863061) | |
| 268-440, gnl|xenTro1|scaffold_68 (2019152-2019336) | |
| 637-786, gnl|bosTau2|chr23 (17032518-17032667) | |
| 637-786, gnl|canFam2|chr12 (14285165-14285283) | |
| 637-786, gnl|danRer3|chr13 (1507535-1507425) | |
| 637-786, gnl|dasNov1|scaffold_24178 (50600-50716) | |
| 637-786, gnl|echTel1|scaffold_119802 (258-142) | |
| 637-786, gnl|fr1|chrUn (69996340-69996468) | |
| 637-786, gnl|galGal2|chr3 (19367741-19367848) | |
| 637-786, gnl|hg17|chr6 (42751756-42751872) | |
| 637-786, gnl|Hg17|chr6 (42751758-42751907) | |
| 637-786, gnl|loxAfr1|scaffold_22175 (33271-33155) | |
| 637-786, gnl|mm7|chr17 (45074700-45074584) | |
| 637-786, gnl|Mm7|chr17 (45074696-45074547) | |
| 637-786, gnl|monDom2|scaffold_0 (198974472-198974360) | |
| 637-786, gnl|oryCun1|scaffold_11512 (1307-1423) | |
| 637-786, gnl|panTro1|chr5 (43336636-43336752) | |
| 637-786, gnl|rheMac2|chr4 (42551924-42552040) | |
| 637-786, gnl|rn3|chr9 (9227641-9227757) | |
| 637-786, gnl|xenTro1|scaffold_68 (2022759-2022872) | |
| 876-1008, gnl|bosTau2|chr23 (17034536-17034668) | |
| 876-1008, gnl|canFam2|chr12 (14287202-14287365) | |
| 876-1008, gnl|danRer3|chr13 (1505087-1504944) | |
| 876-1008, gnl|dasNov1|scaffold_108765 (1159-997) | |
| 876-1008, gnl|fr1|chrUn (94738989-94739145) | |
| 876-1008, gnl|galGal2|chr3 (19368796-19368958) | |
| 876-1008, gnl|hg17|chr6 (42754237-42754401) | |
| 876-1008, gnl|Hg17|chr6 (42754253-42754385) | |
| 876-1008, gnl|loxAfr1|scaffold_6317 (18283-18117) | |
| 876-1008, gnl|mm7|chr17 (45072361-45072200) | |
| 876-1008, gnl|Mm7|chr17 (45072345-45072213) | |
| 876-1008, gnl|monDom2|scaffold_0 (198967646-198967482) | |
| 876-1008, gnl|oryCun1|scaffold_214881 (18391-18554) | |
| 876-1008, gnl|panTro1|chr5 (43339117-43339281) | |
| 876-1008, gnl|rheMac2|chr4 (42554473-42554637) | |
| 876-1008, gnl|rn3|chr9 (9229889-9230050) | |
| 876-1008, gnl|tetNig1|chr17 (7862041-7861888) | |
| 876-1008, gnl|xenTro1|scaffold_68 (2024272-2024436) | |
| 1253-1608, gnl|bosTau2|chr23 (17037528-17037892) | |
| 1253-1608, gnl|Hg17|chr6 (42763932-42764301) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 87-204, gnl|bosTau2|chr23 (17022813-17022930) | |
| 87-204, gnl|canFam2|chr12 (14276320-14276426) | |
| 87-204, gnl|echTel1|scaffold_312705 (4090-3986) | |
| 87-204, gnl|galGal2|chr3 (19362356-19362463) | |
| 87-204, gnl|hg17|chr6 (42741111-42741217) | |
| 87-204, gnl|Hg17|chr6 (42741114-42741231) | |
| 87-204, gnl|loxAfr1|scaffold_22175 (47671-47565) | |
| 87-204, gnl|mm7|chr17 (45082921-45082815) | |
| 87-204, gnl|Mm7|chr17 (45082916-45082799) | |
| 87-204, gnl|monDom2|scaffold_0 (198980865-198980752) | |
| 87-204, gnl|panTro1|chr5 (43325604-43325710) | |
| 87-204, gnl|rheMac2|chr4 (42541316-42541422) | |
| 87-204, gnl|rn3|chr9 (9219894-9219973) | |
| 87-204, gnl|xenTro1|scaffold_68 (2018744-2018846) | |
| 268-440, gnl|bosTau2|chr23 (17026585-17026758) | |
| 268-440, gnl|canFam2|chr12 (14279640-14279832) | |
| 268-440, gnl|danRer3|chr13 (1512020-1511831) | |
| 268-440, gnl|dasNov1|scaffold_19493 (44128-44307) | |
| 268-440, gnl|echTel1|scaffold_312705 (1104-917) | |
| 268-440, gnl|fr1|chrUn (94737522-94737705) | |
| 268-440, gnl|galGal2|chr3 (19363516-19363710) | |
| 268-440, gnl|hg17|chr6 (42745782-42745974) | |
| 268-440, gnl|Hg17|chr6 (42745795-42745968) | |
| 268-440, gnl|loxAfr1|scaffold_22175 (44339-44147) | |
| 268-440, gnl|mm7|chr17 (45077403-45077212) | |
| 268-440, gnl|Mm7|chr17 (45077388-45077216) | |
| 268-440, gnl|monDom2|scaffold_0 (198978045-198977862) | |
| 268-440, gnl|oryCun1|scaffold_214881 (10141-10333) | |
| 268-440, gnl|panTro1|chr5 (43330658-43330850) | |
| 268-440, gnl|rheMac2|chr4 (42546228-42546420) | |
| 268-440, gnl|rn3|chr9 (9223748-9223935) | |
| 268-440, gnl|tetNig1|chr17 (7863225-7863061) | |
| 268-440, gnl|xenTro1|scaffold_68 (2019152-2019336) | |
| 637-786, gnl|bosTau2|chr23 (17032518-17032667) | |
| 637-786, gnl|canFam2|chr12 (14285165-14285283) | |
| 637-786, gnl|danRer3|chr13 (1507535-1507425) | |
| 637-786, gnl|dasNov1|scaffold_24178 (50600-50716) | |
| 637-786, gnl|echTel1|scaffold_119802 (258-142) | |
| 637-786, gnl|fr1|chrUn (69996340-69996468) | |
| 637-786, gnl|galGal2|chr3 (19367741-19367848) | |
| 637-786, gnl|hg17|chr6 (42751756-42751872) | |
| 637-786, gnl|Hg17|chr6 (42751758-42751907) | |
| 637-786, gnl|loxAfr1|scaffold_22175 (33271-33155) | |
| 637-786, gnl|mm7|chr17 (45074700-45074584) | |
| 637-786, gnl|Mm7|chr17 (45074696-45074547) | |
| 637-786, gnl|monDom2|scaffold_0 (198974472-198974360) | |
| 637-786, gnl|oryCun1|scaffold_11512 (1307-1423) | |
| 637-786, gnl|panTro1|chr5 (43336636-43336752) | |
| 637-786, gnl|rheMac2|chr4 (42551924-42552040) | |
| 637-786, gnl|rn3|chr9 (9227641-9227757) | |
| 637-786, gnl|xenTro1|scaffold_68 (2022759-2022872) | |
| 876-1008, gnl|bosTau2|chr23 (17034536-17034668) | |
| 876-1008, gnl|canFam2|chr12 (14287202-14287365) | |
| 876-1008, gnl|danRer3|chr13 (1505087-1504944) | |
| 876-1008, gnl|dasNov1|scaffold_108765 (1159-997) | |
| 876-1008, gnl|fr1|chrUn (94738989-94739145) | |
| 876-1008, gnl|galGal2|chr3 (19368796-19368958) | |
| 876-1008, gnl|hg17|chr6 (42754237-42754401) | |
| 876-1008, gnl|Hg17|chr6 (42754253-42754385) | |
| 876-1008, gnl|loxAfr1|scaffold_6317 (18283-18117) | |
| 876-1008, gnl|mm7|chr17 (45072361-45072200) | |
| 876-1008, gnl|Mm7|chr17 (45072345-45072213) | |
| 876-1008, gnl|monDom2|scaffold_0 (198967646-198967482) | |
| 876-1008, gnl|oryCun1|scaffold_214881 (18391-18554) | |
| 876-1008, gnl|panTro1|chr5 (43339117-43339281) | |
| 876-1008, gnl|rheMac2|chr4 (42554473-42554637) | |
| 876-1008, gnl|rn3|chr9 (9229889-9230050) | |
| 876-1008, gnl|tetNig1|chr17 (7862041-7861888) | |
| 876-1008, gnl|xenTro1|scaffold_68 (2024272-2024436) | |
| 1253-1608, gnl|bosTau2|chr23 (17037528-17037892) | |
| 1253-1608, gnl|Hg17|chr6 (42763932-42764301) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fty (0.351679) | |
| fce (0.271592) | |
| cst (0.140036) | |
| cbl (0.114797) | |
| ldo (0.0970026) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.351679) | |
| fce (0.271592) | |
| cst (0.140036) | |
| cbl (0.114797) | |
| ldo (0.0970026) |