Non-Coding RNA Search

Ss1.1-rfty520b_i10.5

Sequence:


               
               AAACATTTGAAAACATCGTTTAAAAAAAACTGTCTAGCTTTAGATATTAAAGCTCATGGT
GTCTTATTAACAGGGATGGAGTTTGTAATGATCAGATTCAGCATGTGGTTTCAACTTCGA
ATCTGAATATTTCTTCCCTAGCTTCTTAAAGTCATTTTTTCTGAGCAGACTGTCACCAGT
ATTGGTAACTAATCATTCAAGGGAAAAGTTGCATTGCAACTATCTATTAGTTTCCTGGAA
GAACTTTTCTTGTGTTTTAGTGAATGAAGAGTATTGATGGGATCACTTACTGTAACTCCT
TCTAAATAAAAACCCCTTCTGCAAGCAGAACACAAATGAACATGCTCAAGGAGTATCCCA
TTTTCTGGATAAATTGAATGAATTTGCTAGTTACTCCTTTATACTAGCGGTTTCTTTGTA
TCCCTTTGCTGGCAAGGGAATACAAGGAGTCAAGGCCACCGATCCAAACACCCCACATTT
GAGTGGAGTCCTGTTTTTACTCCAAGAGCAGTTATTCCCCCAGGTCTGAAATTGGCAGTT
TTTTCTTTTTTAAAATAAAAATTTTTAAATATCCTTACCAGTGGAACACAGACACTGGCT
GCACTTAGTACTGCCAAATCCAAGGTCATTTGCATATATTCCATCAATCTGTCAAGAATT
AGGCCTCACTTTATAACCCAAGGCATGGAAGTGCATGCATTCTCTTAGCTGGGCAAACAA
TTATACTGTAGTTGTGATACAACACATGTGGCTTTTATTTGTACTGCACATATCCACTGT
ACAGCCACTTGGGAGTATCGTGGTTAGCTTGCAGCAACTGCTGTCTGCATTTATACTGTT
TATTGCATATTCTTTTCCCTGGAAGTGAAAGAGAAATGTTTTTCTTGTTGCATTGATTAC
ATTTTATAAATTTGCTTAGCTGGAAAGTTTGGGAAAAGAGGCCTGTTTGTCAATTGTACA
ACCGATTGTGAAGCTCTAGTGTGAATATTTTTACGTCTGTATTAGACATTTTCTTTGCAA
ATCTATTGTTCGATTGAAATGTAAATGAAATTAAAGATGGTGTACACCCATCATGTAAAA
AGCAGGCACCATCTCTAAGATGGATTTAATGCTCATTTTTAAGGCATATACTCAGCTTCT
ATTTAAAACTATAATTTAAAATAATTCTGTACAATGAAATGGGGAATATATATGGGAATA
AATTCTATTCCATTTATTTCAATTTGAATTTCCAAATTGTAATGTTTCCCTTTGTGCTAT
AGGAATAGGATTAAATGCGGGAAGGCTAGGATTCATAAGGCCTGTATATGGGGGGAGGGC
AGAGATGGAACAATGAGGGTTGTGATGATAGTGAATAGCAAAGAGTGAATTCTGTGTGTT
TTTGCTGTAGCACTGAAGTGAAGAGATATTAGCTTTGGCTGTTCACAGAATAGAGCATCA
TGATTTTCAGTGTTTGAGAGAAAATTGATGGAAAAAGTTTGCAGTACTTGACATGTATTT
GCATGCACAAAATAAAATTATTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACATTTGAAAACATCGTTTAAAAAAAACTGTCTAGCTTTAGATATTAAAGCTCATGGT
GTCTTATTAACAGGGATGGAGTTTGTAATGATCAGATTCAGCATGTGGTTTCAACTTCGA
ATCTGAATATTTCTTCCCTAGCTTCTTAAAGTCATTTTTTCTGAGCAGACTGTCACCAGT
ATTGGTAACTAATCATTCAAGGGAAAAGTTGCATTGCAACTATCTATTAGTTTCCTGGAA
GAACTTTTCTTGTGTTTTAGTGAATGAAGAGTATTGATGGGATCACTTACTGTAACTCCT
TCTAAATAAAAACCCCTTCTGCAAGCAGAACACAAATGAACATGCTCAAGGAGTATCCCA
TTTTCTGGATAAATTGAATGAATTTGCTAGTTACTCCTTTATACTAGCGGTTTCTTTGTA
TCCCTTTGCTGGCAAGGGAATACAAGGAGTCAAGGCCACCGATCCAAACACCCCACATTT
GAGTGGAGTCCTGTTTTTACTCCAAGAGCAGTTATTCCCCCAGGTCTGAAATTGGCAGTT
TTTTCTTTTTTAAAATAAAAATTTTTAAATATCCTTACCAGTGGAACACAGACACTGGCT
GCACTTAGTACTGCCAAATCCAAGGTCATTTGCATATATTCCATCAATCTGTCAAGAATT
AGGCCTCACTTTATAACCCAAGGCATGGAAGTGCATGCATTCTCTTAGCTGGGCAAACAA
TTATACTGTAGTTGTGATACAACACATGTGGCTTTTATTTGTACTGCACATATCCACTGT
ACAGCCACTTGGGAGTATCGTGGTTAGCTTGCAGCAACTGCTGTCTGCATTTATACTGTT
TATTGCATATTCTTTTCCCTGGAAGTGAAAGAGAAATGTTTTTCTTGTTGCATTGATTAC
ATTTTATAAATTTGCTTAGCTGGAAAGTTTGGGAAAAGAGGCCTGTTTGTCAATTGTACA
ACCGATTGTGAAGCTCTAGTGTGAATATTTTTACGTCTGTATTAGACATTTTCTTTGCAA
ATCTATTGTTCGATTGAAATGTAAATGAAATTAAAGATGGTGTACACCCATCATGTAAAA
AGCAGGCACCATCTCTAAGATGGATTTAATGCTCATTTTTAAGGCATATACTCAGCTTCT
ATTTAAAACTATAATTTAAAATAATTCTGTACAATGAAATGGGGAATATATATGGGAATA
AATTCTATTCCATTTATTTCAATTTGAATTTCCAAATTGTAATGTTTCCCTTTGTGCTAT
AGGAATAGGATTAAATGCGGGAAGGCTAGGATTCATAAGGCCTGTATATGGGGGGAGGGC
AGAGATGGAACAATGAGGGTTGTGATGATAGTGAATAGCAAAGAGTGAATTCTGTGTGTT
TTTGCTGTAGCACTGAAGTGAAGAGATATTAGCTTTGGCTGTTCACAGAATAGAGCATCA
TGATTTTCAGTGTTTGAGAGAAAATTGATGGAAAAAGTTTGCAGTACTTGACATGTATTT
GCATGCACAAAATAAAATTATTTG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               343-576, - strand, RNAz p=0.999009
               

               
               694-813, - strand, RNAz p=0.534869
               

               
               973-1490, + strand, RNAz p=0.941442

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               343-576, - strand, RNAz p=0.999009
               

               
               694-813, - strand, RNAz p=0.534869
               

               
               973-1490, + strand, RNAz p=0.941442

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               973-1490, DKFZp686I10116_s1 686 (synonym (emb|BX503705.1|), blast E-value=0, 
identity=98.84% 
               

               
               973-1490, th78c02.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE 
(gb|AI492882.1|), blast E-value=0, identity=99.03% 
               

               
               973-1490, if24c08.x5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|CK819764.1|), blast E-value=0, identity=98.84% 
               

               
               973-1490, DOG_EST_P111C05 Canis familiaris testis cDNA Canis familiaris cDNA, 
(gb|CX990458.1|), blast E-value=0, identity=99.42% 
               

               
               973-1490, naf10b04.x1 Rabbit eye cornea. Unnormalized (naf) Oryctolagus 
(gb|DN882792.1|), blast E-value=0, identity=98.84% 
               

               
               973-1490, naf38a12.y1 Rabbit eye cornea. Unnormalized (naf) Oryctolagus 
(gb|DN886621.1|), blast E-value=0, identity=98.84%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               973-1490, DKFZp686I10116_s1 686 (synonym (emb|BX503705.1|), blast E-value=0, 
identity=98.84% 
               

               
               973-1490, th78c02.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE 
(gb|AI492882.1|), blast E-value=0, identity=99.03% 
               

               
               973-1490, if24c08.x5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|CK819764.1|), blast E-value=0, identity=98.84% 
               

               
               973-1490, DOG_EST_P111C05 Canis familiaris testis cDNA Canis familiaris cDNA, 
(gb|CX990458.1|), blast E-value=0, identity=99.42% 
               

               
               973-1490, naf10b04.x1 Rabbit eye cornea. Unnormalized (naf) Oryctolagus 
(gb|DN882792.1|), blast E-value=0, identity=98.84% 
               

               
               973-1490, naf38a12.y1 Rabbit eye cornea. Unnormalized (naf) Oryctolagus 
(gb|DN886621.1|), blast E-value=0, identity=98.84%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               191-1524, gnl|bosTau2|chr11 (75316761-75315420)
               

               
               191-1524, gnl|Hg17|chr9 (122687983-122686401)
               

               
               191-1524, gnl|Mm7|chr2 (37378958-37377392)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               191-1524, gnl|bosTau2|chr11 (75316761-75315420)
               

               
               191-1524, gnl|Hg17|chr9 (122687983-122686401)
               

               
               191-1524, gnl|Mm7|chr2 (37378958-37377392)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               vin (0.332557)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	343-576, - strand, RNAz p=0.999009
	694-813, - strand, RNAz p=0.534869
	973-1490, + strand, RNAz p=0.941442

	973-1490, DKFZp686I10116_s1 686 (synonym (emb\|BX503705.1\|), blast E-value=0, identity=98.84%
	973-1490, th78c02.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE (gb\|AI492882.1\|), blast E-value=0, identity=99.03%
	973-1490, if24c08.x5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens (gb\|CK819764.1\|), blast E-value=0, identity=98.84%
	973-1490, DOG_EST_P111C05 Canis familiaris testis cDNA Canis familiaris cDNA, (gb\|CX990458.1\|), blast E-value=0, identity=99.42%
	973-1490, naf10b04.x1 Rabbit eye cornea. Unnormalized (naf) Oryctolagus (gb\|DN882792.1\|), blast E-value=0, identity=98.84%
	973-1490, naf38a12.y1 Rabbit eye cornea. Unnormalized (naf) Oryctolagus (gb\|DN886621.1\|), blast E-value=0, identity=98.84%

	191-1524, gnl\|bosTau2\|chr11 (75316761-75315420)
	191-1524, gnl\|Hg17\|chr9 (122687983-122686401)
	191-1524, gnl\|Mm7\|chr2 (37378958-37377392)

	vin (0.332557)
	cty (0.31224)
	sme (0.305437)
	fty (0.17584)
	fbs (0.175346)
	fhi (0.169578)
	lun (0.150489)
	csk (0.140746)
	lyg (0.133103)
	ebs (0.118301)
	jca (0.11396)
	ldo (0.0970026)