Non-Coding RNA Search

Ss1.1-rfty522b_l13.5

Sequence:


               
               GTTGCTCACATCTCCCGGCGCGGCCACGGCGCCCGCGGACCCGGCGCGCCGCCCGCCTCC
CGCGCCGCGCCCTCGCCGCTCCTGCCGTCCCGGAGGCCTGGCCGGACCCGGATCCCTGAG
CGCCTCCAGCTCGGCTCCCGACTCCCTGCTCTTTCTCCCTGTCGCCCCGGCTCGCCGGCC
CGAGAGCAGGAACACGGTGATCATCTCATGTGTTGCAAAAGACCCCATCTACCTCCGTTC
AGCAAGAGGAGCTGGCGAGATTTCTTCTGGGCGATAGCATAAAAGGAAGAATATTGATGG
ATTTTAAACCACAGTTCTTAAAGCATCTGCGAATCCTGGGGCAATAATTTGTTCTCCTGC
ACCGCATATAGAGGCTAAGTTTGTTTCTGATGCAGCTGAGAAAAATGCAGAGCATCAAGA
AGGAGCAGGCGTCTCTTGATGCCGGGAGCAGCATGGACAAGATGATGGTGCTTAATTCGG
CCCTAAGCGAAGTTGCCGAAGACTTGACGACGGGCGAAGAGCTCCTTCTCAACGAAGGAA
GTGTGGGCAAAAACAAATCTTCAGCGTGTCGGAGGAAACGGGAATTCATTCCCGACGAGA
AGAAAGATGCCATGTATTGGGAAAAGAGGCGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGCTCACATCTCCCGGCGCGGCCACGGCGCCCGCGGACCCGGCGCGCCGCCCGCCTCC
CGCGCCGCGCCCTCGCCGCTCCTGCCGTCCCGGAGGCCTGGCCGGACCCGGATCCCTGAG
CGCCTCCAGCTCGGCTCCCGACTCCCTGCTCTTTCTCCCTGTCGCCCCGGCTCGCCGGCC
CGAGAGCAGGAACACGGTGATCATCTCATGTGTTGCAAAAGACCCCATCTACCTCCGTTC
AGCAAGAGGAGCTGGCGAGATTTCTTCTGGGCGATAGCATAAAAGGAAGAATATTGATGG
ATTTTAAACCACAGTTCTTAAAGCATCTGCGAATCCTGGGGCAATAATTTGTTCTCCTGC
ACCGCATATAGAGGCTAAGTTTGTTTCTGATGCAGCTGAGAAAAATGCAGAGCATCAAGA
AGGAGCAGGCGTCTCTTGATGCCGGGAGCAGCATGGACAAGATGATGGTGCTTAATTCGG
CCCTAAGCGAAGTTGCCGAAGACTTGACGACGGGCGAAGAGCTCCTTCTCAACGAAGGAA
GTGTGGGCAAAAACAAATCTTCAGCGTGTCGGAGGAAACGGGAATTCATTCCCGACGAGA
AGAAAGATGCCATGTATTGGGAAAAGAGGCGGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               513-636, + strand, RNAz p=0.895985

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               513-636, + strand, RNAz p=0.895985

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005384, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005384, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-198, gnl|bosTau2|chr8 (46250025-46250216)
               

               
               7-198, gnl|Hg17|chr9 (91265665-91265475)
               

               
               7-198, gnl|Mm7|chr13 (52021845-52021666)
               


               
               237-636, gnl|bosTau2|chr8 (46261182-46261580)
               

               
               237-636, gnl|Hg17|chr9 (91252721-91252325)
               

               
               237-636, gnl|Mm7|chr13 (52009808-52009427)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-198, gnl|bosTau2|chr8 (46250025-46250216)
               

               
               7-198, gnl|Hg17|chr9 (91265665-91265475)
               

               
               7-198, gnl|Mm7|chr13 (52021845-52021666)
               


               
               237-636, gnl|bosTau2|chr8 (46261182-46261580)
               

               
               237-636, gnl|Hg17|chr9 (91252721-91252325)
               

               
               237-636, gnl|Mm7|chr13 (52009808-52009427)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.351679)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)

	7-198, gnl\|bosTau2\|chr8 (46250025-46250216)
	7-198, gnl\|Hg17\|chr9 (91265665-91265475)
	7-198, gnl\|Mm7\|chr13 (52021845-52021666)

	237-636, gnl\|bosTau2\|chr8 (46261182-46261580)
	237-636, gnl\|Hg17\|chr9 (91252721-91252325)
	237-636, gnl\|Mm7\|chr13 (52009808-52009427)