Non-Coding RNA Search

Ss1.1-rfty523b_a24.5

Sequence:


               
               GTCCATTGCACCCTGTCTCCTTCTCCCCCCAAACCCTTGCCATGCCTGCCTCTGCACCCC
CAGTCCTGCTTAGAGCTGCTGGACTGGACCATCTGCTGCCCCCACCCCCAACTGTGTCCC
TCTCCATCAGCACTGGATGGGGAGCCAGTGAGGTGCCACTGCCCTCTTGGGACCTGGGGT
CCAGCCTAGCTGTGCCTTTCCCTTGGTCACATCAGGCCAAGGATGTATGCAGCCCCTAGG
CCCCCAGCACAGGCCTCACCCCCACTTCCCCTCTATAGCAGCGACTTCAGCAGGGCTGTG
GCTGAGGAGTACCTCTCCTTCTTCCAGTTTGGAGGCCAGAGCCTGGACCGCGCGCTCCGG
GGCTTCCTCCAGGCCCTGGTGCTCAGCGGGGAGACCCAGGAGCGCGAGCGGATCCTCTAC
CAGTTCTCCAAGCGCTTCCATTACTGCAACCCCGGGCTCTTCTCCTCAGTAGATTGCGTG
CACACTTTGACCTGTGCCATCATGCTCCTTAACACGGACCTGCACGGACAGAACATCGGG
AAGAGCATGAGCTGCCAGGAGTTCATAACCAACCTGAATGGCTTGCAGGATGGTGGGAAC
TTCCCCAAGGAACTGCTCAAGGCCCTGTACTGGTCTATCCGGAGTGAGAAGCTGGAGTGG
GCTGTGGACGAGGAAGATGCAGCCACGCCCGAGAAGGCCCGGCCATCTCCCCCAGCTGGC
AAGATGAGCAACCCCTTCCTCCAGCTGGCACAGGACCCCACAGTCCCCACCTACAAGCAG
GGCATCCTGGCTCGGAAGATGCATCAGGATGCGGATGGCAAGAAGACACCTTGGGGCAAG
CGTGGCTGGAAGATGATCCATACCTTACTGCGAGGGATGGTGCTCTACTTCCTGAAGGGA
GAGGACCTCAGGCTGGAGGGCGAGAGTTTGGTGGGGCAGATGGTGGACGAGCCTGTGGGG
GTGCACCACTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCATTGCACCCTGTCTCCTTCTCCCCCCAAACCCTTGCCATGCCTGCCTCTGCACCCC
CAGTCCTGCTTAGAGCTGCTGGACTGGACCATCTGCTGCCCCCACCCCCAACTGTGTCCC
TCTCCATCAGCACTGGATGGGGAGCCAGTGAGGTGCCACTGCCCTCTTGGGACCTGGGGT
CCAGCCTAGCTGTGCCTTTCCCTTGGTCACATCAGGCCAAGGATGTATGCAGCCCCTAGG
CCCCCAGCACAGGCCTCACCCCCACTTCCCCTCTATAGCAGCGACTTCAGCAGGGCTGTG
GCTGAGGAGTACCTCTCCTTCTTCCAGTTTGGAGGCCAGAGCCTGGACCGCGCGCTCCGG
GGCTTCCTCCAGGCCCTGGTGCTCAGCGGGGAGACCCAGGAGCGCGAGCGGATCCTCTAC
CAGTTCTCCAAGCGCTTCCATTACTGCAACCCCGGGCTCTTCTCCTCAGTAGATTGCGTG
CACACTTTGACCTGTGCCATCATGCTCCTTAACACGGACCTGCACGGACAGAACATCGGG
AAGAGCATGAGCTGCCAGGAGTTCATAACCAACCTGAATGGCTTGCAGGATGGTGGGAAC
TTCCCCAAGGAACTGCTCAAGGCCCTGTACTGGTCTATCCGGAGTGAGAAGCTGGAGTGG
GCTGTGGACGAGGAAGATGCAGCCACGCCCGAGAAGGCCCGGCCATCTCCCCCAGCTGGC
AAGATGAGCAACCCCTTCCTCCAGCTGGCACAGGACCCCACAGTCCCCACCTACAAGCAG
GGCATCCTGGCTCGGAAGATGCATCAGGATGCGGATGGCAAGAAGACACCTTGGGGCAAG
CGTGGCTGGAAGATGATCCATACCTTACTGCGAGGGATGGTGCTCTACTTCCTGAAGGGA
GAGGACCTCAGGCTGGAGGGCGAGAGTTTGGTGGGGCAGATGGTGGACGAGCCTGTGGGG
GTGCACCACTCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               666-784, - strand, RNAz p=0.810521

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               666-784, - strand, RNAz p=0.810521

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               55-360, gnl|bosTau2|chr11 (33523160-33522849)
               

               
               55-360, gnl|Hg17|chr2 (113666590-113666937)
               

               
               55-360, gnl|Mm7|chr2 (24408075-24408406)
               


               
               666-826, gnl|bosTau2|chr11 (33520070-33519910)
               

               
               666-826, gnl|Hg17|chr2 (113669955-113670115)
               

               
               666-826, gnl|Mm7|chr2 (24410511-24410671)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-360, gnl|bosTau2|chr11 (33523160-33522849)
               

               
               55-360, gnl|Hg17|chr2 (113666590-113666937)
               

               
               55-360, gnl|Mm7|chr2 (24408075-24408406)
               


               
               666-826, gnl|bosTau2|chr11 (33520070-33519910)
               

               
               666-826, gnl|Hg17|chr2 (113669955-113670115)
               

               
               666-826, gnl|Mm7|chr2 (24410511-24410671)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               lnt (0.142308)

	55-360, gnl\|bosTau2\|chr11 (33523160-33522849)
	55-360, gnl\|Hg17\|chr2 (113666590-113666937)
	55-360, gnl\|Mm7\|chr2 (24408075-24408406)

	666-826, gnl\|bosTau2\|chr11 (33520070-33519910)
	666-826, gnl\|Hg17\|chr2 (113669955-113670115)
	666-826, gnl\|Mm7\|chr2 (24410511-24410671)