Non-Coding RNA Search

Ss1.1-rfty523b_h18.5

Sequence:


               
               CCAGCTCCGACACTGGTATGAGAACCAGGAGACAGCAGCCGGGAGCCCTCCAGGGCAGGA
GCCCTGGAGCCCTGCAGGCGCCTTTCTCCCCAGACCCTCCAGGCACATGTGACAATCATT
TGAACAGTAGCCACAAGGGGGCGCTCCTACCAGACCGCAGTTTTCCTGGTGCTCTCTGGG
CAGGCCTGGTACTTGCTGTAAGACCAGGCAGGCAGGGGCTGAAAGGAGTTTCTCTGCCCA
AGGAAGACAGAACACGGAGGACCTTGAGAGCAGGAACTCCACAGACTTCCCTTCCAGCCC
ACACTCTGCTGCCTCCTGGCTCTGTCCCATTTCTGAGCCAAGGCTCTGAGGCAGAAAGTC
CCCTGATCCTGTGTCCATGGGGCACTGACTAGGGCAGAGGTTAAAGGCTACAATATCTCG
GAGAACTGGATGGTGACTGCCTTTGGAAGCCAGCAGGCAGTGGTGGCTCAGAGTTCCTAT
AGACCCCCTTCTTGCCCCCAGGTTTCACAGAGGACAACTCAATCAGTAGCAGCATGACCA
AGGATGCCGGAAGGGTTTCTAGGGAGAGTTCTGGTTGAGCTCTGCCAGTGTTTCACACAG
GCATCACTGAGAGAGTCCCTTTGGAGAAATCTGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCTCCGACACTGGTATGAGAACCAGGAGACAGCAGCCGGGAGCCCTCCAGGGCAGGA
GCCCTGGAGCCCTGCAGGCGCCTTTCTCCCCAGACCCTCCAGGCACATGTGACAATCATT
TGAACAGTAGCCACAAGGGGGCGCTCCTACCAGACCGCAGTTTTCCTGGTGCTCTCTGGG
CAGGCCTGGTACTTGCTGTAAGACCAGGCAGGCAGGGGCTGAAAGGAGTTTCTCTGCCCA
AGGAAGACAGAACACGGAGGACCTTGAGAGCAGGAACTCCACAGACTTCCCTTCCAGCCC
ACACTCTGCTGCCTCCTGGCTCTGTCCCATTTCTGAGCCAAGGCTCTGAGGCAGAAAGTC
CCCTGATCCTGTGTCCATGGGGCACTGACTAGGGCAGAGGTTAAAGGCTACAATATCTCG
GAGAACTGGATGGTGACTGCCTTTGGAAGCCAGCAGGCAGTGGTGGCTCAGAGTTCCTAT
AGACCCCCTTCTTGCCCCCAGGTTTCACAGAGGACAACTCAATCAGTAGCAGCATGACCA
AGGATGCCGGAAGGGTTTCTAGGGAGAGTTCTGGTTGAGCTCTGCCAGTGTTTCACACAG
GCATCACTGAGAGAGTCCCTTTGGAGAAATCTGGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               182-414, - strand, RNAz p=0.998291

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               182-414, - strand, RNAz p=0.998291

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               194-344, DA058825 BRACE2 Homo sapiens cDNA clone BRACE2006676 5', mRNA 
(dbj|DA058825.1|), blast E-value=1e-33, identity=88.16% 
               

               
               194-344, DA116656 BRACE3 Homo sapiens cDNA clone BRACE3036084 5', mRNA 
(dbj|DA116656.1|), blast E-value=1e-33, identity=88.16% 
               

               
               194-344, DA361132 BRSTN2 Homo sapiens cDNA clone BRSTN2007408 5', mRNA 
(dbj|DA361132.1|), blast E-value=1e-33, identity=88.16% 
               

               
               194-344, DA363079 BRSTN2 Homo sapiens cDNA clone BRSTN2009925 5', mRNA 
(dbj|DA363079.1|), blast E-value=1e-33, identity=88.16% 
               

               
               194-344, DA363933 BRSTN2 Homo sapiens cDNA clone BRSTN2011077 5', mRNA 
(dbj|DA363933.1|), blast E-value=1e-33, identity=88.16% 
               

               
               206-344, DKFZp459A0722_r1 459 (synonym (emb|CR788098.1|), blast E-value=6e-36, 
identity=90%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               194-344, DA058825 BRACE2 Homo sapiens cDNA clone BRACE2006676 5', mRNA 
(dbj|DA058825.1|), blast E-value=1e-33, identity=88.16% 
               

               
               194-344, DA116656 BRACE3 Homo sapiens cDNA clone BRACE3036084 5', mRNA 
(dbj|DA116656.1|), blast E-value=1e-33, identity=88.16% 
               

               
               194-344, DA361132 BRSTN2 Homo sapiens cDNA clone BRSTN2007408 5', mRNA 
(dbj|DA361132.1|), blast E-value=1e-33, identity=88.16% 
               

               
               194-344, DA363079 BRSTN2 Homo sapiens cDNA clone BRSTN2009925 5', mRNA 
(dbj|DA363079.1|), blast E-value=1e-33, identity=88.16% 
               

               
               194-344, DA363933 BRSTN2 Homo sapiens cDNA clone BRSTN2011077 5', mRNA 
(dbj|DA363933.1|), blast E-value=1e-33, identity=88.16% 
               

               
               206-344, DKFZp459A0722_r1 459 (synonym (emb|CR788098.1|), blast E-value=6e-36, 
identity=90%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               103-636, gnl|bosTau2|chr18 (23195585-23196146)
               

               
               103-636, gnl|Hg17|chr16 (57103451-57104000)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-636, gnl|bosTau2|chr18 (23195585-23196146)
               

               
               103-636, gnl|Hg17|chr16 (57103451-57104000)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ecc (0.23007)
               

               
               fty (0.17584)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               fty (0.17584)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

	194-344, DA058825 BRACE2 Homo sapiens cDNA clone BRACE2006676 5', mRNA (dbj\|DA058825.1\|), blast E-value=1e-33, identity=88.16%
	194-344, DA116656 BRACE3 Homo sapiens cDNA clone BRACE3036084 5', mRNA (dbj\|DA116656.1\|), blast E-value=1e-33, identity=88.16%
	194-344, DA361132 BRSTN2 Homo sapiens cDNA clone BRSTN2007408 5', mRNA (dbj\|DA361132.1\|), blast E-value=1e-33, identity=88.16%
	194-344, DA363079 BRSTN2 Homo sapiens cDNA clone BRSTN2009925 5', mRNA (dbj\|DA363079.1\|), blast E-value=1e-33, identity=88.16%
	194-344, DA363933 BRSTN2 Homo sapiens cDNA clone BRSTN2011077 5', mRNA (dbj\|DA363933.1\|), blast E-value=1e-33, identity=88.16%
	206-344, DKFZp459A0722_r1 459 (synonym (emb\|CR788098.1\|), blast E-value=6e-36, identity=90%

	103-636, gnl\|bosTau2\|chr18 (23195585-23196146)
	103-636, gnl\|Hg17\|chr16 (57103451-57104000)