Ss1.1-rfty523b_h4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGATTCCAACTTGAAGGACACCCAGAGCCACCGTCTGGTATATGCCAGTTTTTCCAAC TGACCTGTATCCTACCCAGCACCTCCTCCCCTTTCCCATAATCCATGACATCAAAACAAC GGCTTTCCCCCTTTTCCTCGAGACTCAGGAGGGCCAAAGCAGCAGCCTCTTGCCTTGTTT CTCTCTCCCTTAGCAAGGGCTGAAGGGAGGGCTCCGTCCTTAGTGTTCAGAGGCACCAAC TCCCTCCCCTCGATCAGGCTGAGAAGGAACCAGCCAGCTCTTACCTCCTCCTGGTTGTTT TTCTTTCCCACCCCAGTTTATTTTTTGTTCCCCCGCTACCCCCTACCTCTGAAGCCATTT TATGAACCGTCATGTGCCACCTGAGCCTCCAGTAAAAACAAAAACAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGATTCCAACTTGAAGGACACCCAGAGCCACCGTCTGGTATATGCCAGTTTTTCCAAC TGACCTGTATCCTACCCAGCACCTCCTCCCCTTTCCCATAATCCATGACATCAAAACAAC GGCTTTCCCCCTTTTCCTCGAGACTCAGGAGGGCCAAAGCAGCAGCCTCTTGCCTTGTTT CTCTCTCCCTTAGCAAGGGCTGAAGGGAGGGCTCCGTCCTTAGTGTTCAGAGGCACCAAC TCCCTCCCCTCGATCAGGCTGAGAAGGAACCAGCCAGCTCTTACCTCCTCCTGGTTGTTT TTCTTTCCCACCCCAGTTTATTTTTTGTTCCCCCGCTACCCCCTACCTCTGAAGCCATTT TATGAACCGTCATGTGCCACCTGAGCCTCCAGTAAAAACAAAAACAGG |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 75-338, - strand, RNAz p=0.881724 | |
| 119-322, - strand, RNAz p=0.997163 | |
| 200-352, - strand, RNAz p=0.99321 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 75-338, - strand, RNAz p=0.881724 | |
| 119-322, - strand, RNAz p=0.997163 | |
| 200-352, - strand, RNAz p=0.99321 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 36-408, gnl|bosTau2|chr19 (20532692-20532307) | |
| 36-408, gnl|canFam2|chr5 (35241131-35241489) | |
| 36-408, gnl|canFam2|chr5 (35241114-35241508) | |
| 36-408, gnl|dasNov1|scaffold_79315 (310-664) | |
| 36-408, gnl|dasNov1|scaffold_79315 (310-665) | |
| 36-408, gnl|echTel1|scaffold_308219 (60514-60870) | |
| 36-408, gnl|echTel1|scaffold_308219 (60499-60889) | |
| 36-408, gnl|hg17|chr15 (91409397-91409781) | |
| 36-408, gnl|hg17|chr17 (7132307-7132666) | |
| 36-408, gnl|Hg17|chr17 (7132690-7132307) | |
| 36-408, gnl|loxAfr1|scaffold_22867 (9015-9358) | |
| 36-408, gnl|loxAfr1|scaffold_22867 (8999-9377) | |
| 36-408, gnl|mm7|chr11 (70023170-70022820) | |
| 36-408, gnl|mm7|chr11 (70023186-70022803) | |
| 36-408, gnl|Mm7|chr11 (70022796-70023168) | |
| 36-408, gnl|monDom2|scaffold_2693 (1147-1452) | |
| 36-408, gnl|monDom2|scaffold_2693 (1150-1518) | |
| 36-408, gnl|oryCun1|scaffold_150251 (13557-13206) | |
| 36-408, gnl|oryCun1|scaffold_211229 (56176-55830) | |
| 36-408, gnl|panTro1|chr16 (92382824-92383208) | |
| 36-408, gnl|panTro1|chr19_random (44617698-44617339) | |
| 36-408, gnl|rheMac2|chr16 (7019945-7020308) | |
| 36-408, gnl|rheMac2|chr7 (72922666-72923049) | |
| 36-408, gnl|rn3|chr10 (56799675-56799323) | |
| 36-408, gnl|rn3|chr10 (56799691-56799306) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-408, gnl|bosTau2|chr19 (20532692-20532307) | |
| 36-408, gnl|canFam2|chr5 (35241131-35241489) | |
| 36-408, gnl|canFam2|chr5 (35241114-35241508) | |
| 36-408, gnl|dasNov1|scaffold_79315 (310-664) | |
| 36-408, gnl|dasNov1|scaffold_79315 (310-665) | |
| 36-408, gnl|echTel1|scaffold_308219 (60514-60870) | |
| 36-408, gnl|echTel1|scaffold_308219 (60499-60889) | |
| 36-408, gnl|hg17|chr15 (91409397-91409781) | |
| 36-408, gnl|hg17|chr17 (7132307-7132666) | |
| 36-408, gnl|Hg17|chr17 (7132690-7132307) | |
| 36-408, gnl|loxAfr1|scaffold_22867 (9015-9358) | |
| 36-408, gnl|loxAfr1|scaffold_22867 (8999-9377) | |
| 36-408, gnl|mm7|chr11 (70023170-70022820) | |
| 36-408, gnl|mm7|chr11 (70023186-70022803) | |
| 36-408, gnl|Mm7|chr11 (70022796-70023168) | |
| 36-408, gnl|monDom2|scaffold_2693 (1147-1452) | |
| 36-408, gnl|monDom2|scaffold_2693 (1150-1518) | |
| 36-408, gnl|oryCun1|scaffold_150251 (13557-13206) | |
| 36-408, gnl|oryCun1|scaffold_211229 (56176-55830) | |
| 36-408, gnl|panTro1|chr16 (92382824-92383208) | |
| 36-408, gnl|panTro1|chr19_random (44617698-44617339) | |
| 36-408, gnl|rheMac2|chr16 (7019945-7020308) | |
| 36-408, gnl|rheMac2|chr7 (72922666-72923049) | |
| 36-408, gnl|rn3|chr10 (56799675-56799323) | |
| 36-408, gnl|rn3|chr10 (56799691-56799306) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| fty (0.17584) |