Non-Coding RNA Search

Ss1.1-rfty523b_i1.5

Sequence:


               
               CGCTGGTCTGTTGAGGGCTCTACCGTTTCCCCGCCATCAACTTCAGTTGCCTGCTTCTCT
CCAGTTTCCAGCATGCCCGGTCCGACGCCCAGTGGCACCAACGTGGGCTCCTCAGGACGC
TCTCCCAGCAAAGCAGTGGCCGCCCGGGCGGCAGGATCCACGGTCCGGCAGAGGAAAAAT
GCCAGCTGTGGAACAAGGAGCGCAGGTCGCACAACCTCAGCAGGCACTGGGGGGATGTGG
CGATTCTACACAGAAGATTCACCAGGGCTCAAAGTTGGCCCTGTTCCAGTATTGGTTATG
AGTCTTCTGTTCATCGCTTCTGTATTTATGTTGCACATTTGGGGCAAGTACACTCGTTCA
TAGATTCGGCTACATCCATCTGTCTGTCATCTGAAGAAGGAAGGAAAAAAACCCAACATA
TCTTGGACCAAAAACATAGTGATTTTCTGTTTATGAGAAAAATTTTCTGTAAGCTTCCTG
TTTTACAGGGAACTTAATAAGAACCGATTTTAAGGAATCAGTTTTTTTCTATGGCTAATA
AACTTTTTAATTCATTTATACCAAGTCTCATTGCTGATGCCTGACTGCTAGGGCCCTTAT
TTTCTCTGCCTTTAGATTTACAAATAAATATGTAGAAAACAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTGGTCTGTTGAGGGCTCTACCGTTTCCCCGCCATCAACTTCAGTTGCCTGCTTCTCT
CCAGTTTCCAGCATGCCCGGTCCGACGCCCAGTGGCACCAACGTGGGCTCCTCAGGACGC
TCTCCCAGCAAAGCAGTGGCCGCCCGGGCGGCAGGATCCACGGTCCGGCAGAGGAAAAAT
GCCAGCTGTGGAACAAGGAGCGCAGGTCGCACAACCTCAGCAGGCACTGGGGGGATGTGG
CGATTCTACACAGAAGATTCACCAGGGCTCAAAGTTGGCCCTGTTCCAGTATTGGTTATG
AGTCTTCTGTTCATCGCTTCTGTATTTATGTTGCACATTTGGGGCAAGTACACTCGTTCA
TAGATTCGGCTACATCCATCTGTCTGTCATCTGAAGAAGGAAGGAAAAAAACCCAACATA
TCTTGGACCAAAAACATAGTGATTTTCTGTTTATGAGAAAAATTTTCTGTAAGCTTCCTG
TTTTACAGGGAACTTAATAAGAACCGATTTTAAGGAATCAGTTTTTTTCTATGGCTAATA
AACTTTTTAATTCATTTATACCAAGTCTCATTGCTGATGCCTGACTGCTAGGGCCCTTAT
TTTCTCTGCCTTTAGATTTACAAATAAATATGTAGAAAACAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               SC61B_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               SC61B_PONPY

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               206-365, + strand, RNAz p=0.827926

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               206-365, + strand, RNAz p=0.827926

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-558, gnl|bosTau2|chr10 (67563582-67564117)
               

               
               16-558, gnl|Hg17|chr11 (47883800-47883256)
               

               
               16-558, gnl|Mm7|chr15 (100282360-100282871)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-558, gnl|bosTau2|chr10 (67563582-67564117)
               

               
               16-558, gnl|Hg17|chr11 (47883800-47883256)
               

               
               16-558, gnl|Mm7|chr15 (100282360-100282871)

Expressed library(ies): 57 entry(ies)

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Expressed library(ies): 57 entry(ies)

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               cje (1.81758)
               

               
               pro (1.5361)
               

               
               cst (1.40036)
               

               
               cki (0.826173)
               

               
               cbe (0.717703)
               

               
               rec (0.692281)
               

               
               nca (0.684369)
               

               
               cut (0.679694)
               

               
               eru (0.60024)
               

               
               pgl (0.592417)
               

               
               nlu (0.575043)
               

               
               csk (0.562984)
               

               
               nep (0.551775)
               

               
               eje (0.494169)
               

               
               csp (0.483559)
               

               
               pty (0.428143)
               

               
               amn (0.417711)
               

               
               nmm (0.398406)
               

               
               jej (0.395687)
               

               
               cly (0.361925)
               

               
               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               jca (0.34188)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (1.81758)
               

               
               pro (1.5361)
               

               
               cst (1.40036)
               

               
               cki (0.826173)
               

               
               cbe (0.717703)
               

               
               rec (0.692281)
               

               
               nca (0.684369)
               

               
               cut (0.679694)
               

               
               eru (0.60024)
               

               
               pgl (0.592417)
               

               
               nlu (0.575043)
               

               
               csk (0.562984)
               

               
               nep (0.551775)
               

               
               eje (0.494169)
               

               
               csp (0.483559)
               

               
               pty (0.428143)
               

               
               amn (0.417711)
               

               
               nmm (0.398406)
               

               
               jej (0.395687)
               

               
               cly (0.361925)
               

               
               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               jca (0.34188)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

	16-558, gnl\|bosTau2\|chr10 (67563582-67564117)
	16-558, gnl\|Hg17\|chr11 (47883800-47883256)
	16-558, gnl\|Mm7\|chr15 (100282360-100282871)

	cje (1.81758)
	pro (1.5361)
	cst (1.40036)
	cki (0.826173)
	cbe (0.717703)
	rec (0.692281)
	nca (0.684369)
	cut (0.679694)
	eru (0.60024)
	pgl (0.592417)
	nlu (0.575043)
	csk (0.562984)
	nep (0.551775)
	eje (0.494169)
	csp (0.483559)
	pty (0.428143)
	amn (0.417711)
	nmm (0.398406)
	jej (0.395687)
	cly (0.361925)
	ebs (0.354904)
	fty (0.351679)
	ill (0.351185)
	jca (0.34188)
	sme (0.305437)
	lun (0.300978)
	fat (0.294855)
	ski (0.29347)
	cga (0.279096)
	che (0.272628)
	ute (0.265569)
	ova (0.258264)
	ese (0.253004)
	mgp (0.230681)
	ecc (0.23007)
	ece (0.229305)
	tes (0.207814)
	hea (0.204499)
	col (0.195008)
	cmu (0.186393)
	sag (0.182715)
	sto (0.179824)
	sin (0.174948)
	nje (0.16592)
	nco (0.161734)
	mga (0.160205)
	cli (0.152812)
	eli (0.151814)
	cag (0.151194)
	lnt (0.142308)
	pla (0.133672)
	lyg (0.133103)
	cov (0.132153)
	thg (0.126791)
	bla (0.124347)
	eep (0.122564)
	spc (0.113366)