Non-Coding RNA Search

Ss1.1-rfty523b_m21.5

Sequence:


               
               TGGCCAACCATTGCCCGGATTGATGACATCTATGGAGATCAGCACCTGGTTTGTACCTGC
CCCCCCATGGATGTGTATGAGTCCCCGTTTTCTGAACAGAAGAGGGCCTCTTCTTAGTCT
TGTCGCCTAAGTTCAAGTGACTGATTTGATGCGCATTTGAGTGATAAATATTTCATCTTT
CATCATAAACTAAAGTAGGGGTTTTATATACTGTGTATATTTTTGTAAGTTCTGTGGAGG
TTAATGTAAATACAACTAGCATAGTAAGTGGAAGCTCATCATTGGGAGATTGATTTGATT
TGCTTTGGTGCTTCTGCTTTCACATGCATCAGTTGATGTTCAAGTTGCCTTGATTGGGAC
CATTTAGTTTTTTGCATAGAAATTCTGGGGTGTGCTAGTAACTTTAACTTCAATGTAGCA
AATTTGCAGGTGTAATAGAGGCTATACTGGAGGGAAGATAGACATTTTTATTCCAAAAAG
TCCTTGTGGACTATGCCATCTGTGGGAAATCCCAGGGCAAATGTTTACATTTTGTATACA
CTGAAGAAATCTTTTTCCTCCTACTAATTTACCTAATTTGTAACAGCATTTCTAAGTGTT
TTCCTTTTTCCATGTTTGTAGTTTTTTTTTACATCTGCAATAAGTAACATTCTAATAAAA
GCATTGAAGTGCAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCAACCATTGCCCGGATTGATGACATCTATGGAGATCAGCACCTGGTTTGTACCTGC
CCCCCCATGGATGTGTATGAGTCCCCGTTTTCTGAACAGAAGAGGGCCTCTTCTTAGTCT
TGTCGCCTAAGTTCAAGTGACTGATTTGATGCGCATTTGAGTGATAAATATTTCATCTTT
CATCATAAACTAAAGTAGGGGTTTTATATACTGTGTATATTTTTGTAAGTTCTGTGGAGG
TTAATGTAAATACAACTAGCATAGTAAGTGGAAGCTCATCATTGGGAGATTGATTTGATT
TGCTTTGGTGCTTCTGCTTTCACATGCATCAGTTGATGTTCAAGTTGCCTTGATTGGGAC
CATTTAGTTTTTTGCATAGAAATTCTGGGGTGTGCTAGTAACTTTAACTTCAATGTAGCA
AATTTGCAGGTGTAATAGAGGCTATACTGGAGGGAAGATAGACATTTTTATTCCAAAAAG
TCCTTGTGGACTATGCCATCTGTGGGAAATCCCAGGGCAAATGTTTACATTTTGTATACA
CTGAAGAAATCTTTTTCCTCCTACTAATTTACCTAATTTGTAACAGCATTTCTAAGTGTT
TTCCTTTTTCCATGTTTGTAGTTTTTTTTTACATCTGCAATAAGTAACATTCTAATAAAA
GCATTGAAGTGCAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               179-298, - strand, RNAz p=0.770899
               

               
               421-576, + strand, RNAz p=0.854791

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-298, - strand, RNAz p=0.770899
               

               
               421-576, + strand, RNAz p=0.854791

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of D90239, -
               

               
               5' of D90239, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of D90239, -
               

               
               5' of D90239, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-665, gnl|bosTau2|chr8 (19082729-19083364)
               

               
               1-665, gnl|canFam2|chr11 (30510218-30510656)
               

               
               1-665, gnl|danRer3|chr5 (72659212-72658766)
               

               
               1-665, gnl|dasNov1|scaffold_54174 (7327-6880)
               

               
               1-665, gnl|echTel1|scaffold_263053 (25428-24950)
               

               
               1-665, gnl|galGal2|chrZ (12134731-12135135)
               

               
               1-665, gnl|hg17|chr9 (6522451-6522892)
               

               
               1-665, gnl|Hg17|chr9 (6523133-6522477)
               

               
               1-665, gnl|loxAfr1|scaffold_50340 (30259-29800)
               

               
               1-665, gnl|mm7|chr19 (29798281-29798690)
               

               
               1-665, gnl|Mm7|chr19 (29798927-29798304)
               

               
               1-665, gnl|monDom2|scaffold_5 (110086240-110085808)
               

               
               1-665, gnl|oryCun1|scaffold_193305 (134-553)
               

               
               1-665, gnl|panTro1|chr11 (6451739-6452174)
               

               
               1-665, gnl|rheMac2|chr15 (70623250-70622816)
               

               
               1-665, gnl|rn3|chr1 (234010706-234011117)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-665, gnl|bosTau2|chr8 (19082729-19083364)
               

               
               1-665, gnl|canFam2|chr11 (30510218-30510656)
               

               
               1-665, gnl|danRer3|chr5 (72659212-72658766)
               

               
               1-665, gnl|dasNov1|scaffold_54174 (7327-6880)
               

               
               1-665, gnl|echTel1|scaffold_263053 (25428-24950)
               

               
               1-665, gnl|galGal2|chrZ (12134731-12135135)
               

               
               1-665, gnl|hg17|chr9 (6522451-6522892)
               

               
               1-665, gnl|Hg17|chr9 (6523133-6522477)
               

               
               1-665, gnl|loxAfr1|scaffold_50340 (30259-29800)
               

               
               1-665, gnl|mm7|chr19 (29798281-29798690)
               

               
               1-665, gnl|Mm7|chr19 (29798927-29798304)
               

               
               1-665, gnl|monDom2|scaffold_5 (110086240-110085808)
               

               
               1-665, gnl|oryCun1|scaffold_193305 (134-553)
               

               
               1-665, gnl|panTro1|chr11 (6451739-6452174)
               

               
               1-665, gnl|rheMac2|chr15 (70623250-70622816)
               

               
               1-665, gnl|rn3|chr1 (234010706-234011117)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               fty (0.17584)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               fty (0.17584)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

	179-298, - strand, RNAz p=0.770899
	421-576, + strand, RNAz p=0.854791

	1-665, gnl\|bosTau2\|chr8 (19082729-19083364)
	1-665, gnl\|canFam2\|chr11 (30510218-30510656)
	1-665, gnl\|danRer3\|chr5 (72659212-72658766)
	1-665, gnl\|dasNov1\|scaffold_54174 (7327-6880)
	1-665, gnl\|echTel1\|scaffold_263053 (25428-24950)
	1-665, gnl\|galGal2\|chrZ (12134731-12135135)
	1-665, gnl\|hg17\|chr9 (6522451-6522892)
	1-665, gnl\|Hg17\|chr9 (6523133-6522477)
	1-665, gnl\|loxAfr1\|scaffold_50340 (30259-29800)
	1-665, gnl\|mm7\|chr19 (29798281-29798690)
	1-665, gnl\|Mm7\|chr19 (29798927-29798304)
	1-665, gnl\|monDom2\|scaffold_5 (110086240-110085808)
	1-665, gnl\|oryCun1\|scaffold_193305 (134-553)
	1-665, gnl\|panTro1\|chr11 (6451739-6452174)
	1-665, gnl\|rheMac2\|chr15 (70623250-70622816)
	1-665, gnl\|rn3\|chr1 (234010706-234011117)

	fce (0.271592)
	mgp (0.230681)
	fty (0.17584)
	ret (0.128733)
	spc (0.113366)