Ss1.1-rfty526b_j2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAACGACTTATTGAGGAATTGAAAAACAGACAGACTCAAGAAAGAGCAAGACTCCCTAAG ATTCAACGCAGTGAAGCGAAAACTCGAATGGCCATGTTTAAGAAGAGTTTAAGAATTAAC TCAACAGCGACACCTGATCAGGACCGCGACAAAATTAAACAATTTGCCGCTCAAGAAGAA AAGAGGCAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAAAATCAAATGCGGGAT CTTCAGTTGCAGTGTGAAGCTAATGTCCGTGAACTGCATCAACTGCAGAATGAAAAATGC CACCTATTGGTTGAACATGAGACTCAGAAACTGAAGGAGTTAGATGAGGAACACATCCAA GAATTAAAAGAATGGAGAGAGAAATTGAGACCTAGGAAAAAGACACTGGAAGAAGAGTTT GCTAGGAAACTGCAGGAACAGGAAGTGTTCTTTAAAATGACCGGGGAGTCTGAATGCCTT AACCCATCAACACAGAGCCGGATTTCCAAATTCTATCCTGTTCCTAGCTTGCATTCCACT GGATCATAACAATGGGAAGCATTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAACGACTTATTGAGGAATTGAAAAACAGACAGACTCAAGAAAGAGCAAGACTCCCTAAG ATTCAACGCAGTGAAGCGAAAACTCGAATGGCCATGTTTAAGAAGAGTTTAAGAATTAAC TCAACAGCGACACCTGATCAGGACCGCGACAAAATTAAACAATTTGCCGCTCAAGAAGAA AAGAGGCAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAAAATCAAATGCGGGAT CTTCAGTTGCAGTGTGAAGCTAATGTCCGTGAACTGCATCAACTGCAGAATGAAAAATGC CACCTATTGGTTGAACATGAGACTCAGAAACTGAAGGAGTTAGATGAGGAACACATCCAA GAATTAAAAGAATGGAGAGAGAAATTGAGACCTAGGAAAAAGACACTGGAAGAAGAGTTT GCTAGGAAACTGCAGGAACAGGAAGTGTTCTTTAAAATGACCGGGGAGTCTGAATGCCTT AACCCATCAACACAGAGCCGGATTTCCAAATTCTATCCTGTTCCTAGCTTGCATTCCACT GGATCATAACAATGGGAAGCATTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 1-162, gnl|bosTau2|chr26 (17767641-17767802) | |
| 1-162, gnl|canFam2|chr28 (19342333-19342534) | |
| 1-162, gnl|danRer3|chr13 (27825095-27824897) | |
| 1-162, gnl|dasNov1|scaffold_50137 (1132-931) | |
| 1-162, gnl|echTel1|scaffold_320644 (45689-45888) | |
| 1-162, gnl|fr1|chrUn (8909087-8909293) | |
| 1-162, gnl|galGal2|chr6 (23185241-23185441) | |
| 1-162, gnl|hg17|chr10 (105769474-105769675) | |
| 1-162, gnl|Hg17|chr10 (105769509-105769670) | |
| 1-162, gnl|mm7|chr19 (47537699-47537899) | |
| 1-162, gnl|Mm7|chr19 (47537734-47537895) | |
| 1-162, gnl|monDom2|scaffold_14 (59173649-59173448) | |
| 1-162, gnl|oryCun1|scaffold_174256 (4809-4991) | |
| 1-162, gnl|panTro1|chr8 (107570692-107570893) | |
| 1-162, gnl|rheMac2|chr9 (103718230-103718431) | |
| 1-162, gnl|rn3|chr1 (253266636-253266836) | |
| 1-162, gnl|tetNig1|chr17 (6868497-6868295) | |
| 1-162, gnl|xenTro1|scaffold_233 (722277-722462) | |
| 163-288, gnl|bosTau2|chr26 (17768353-17768478) | |
| 163-288, gnl|canFam2|chr28 (19343049-19343196) | |
| 163-288, gnl|danRer3|chr13 (27823958-27823796) | |
| 163-288, gnl|dasNov1|scaffold_50137 (481-328) | |
| 163-288, gnl|echTel1|scaffold_320644 (46333-46491) | |
| 163-288, gnl|fr1|chrUn (8909584-8909735) | |
| 163-288, gnl|galGal2|chr6 (23185788-23185931) | |
| 163-288, gnl|hg17|chr10 (105770212-105770363) | |
| 163-288, gnl|Hg17|chr10 (105770236-105770361) | |
| 163-288, gnl|loxAfr1|scaffold_5312 (45744-45898) | |
| 163-288, gnl|mm7|chr19 (47538115-47538266) | |
| 163-288, gnl|Mm7|chr19 (47538139-47538264) | |
| 163-288, gnl|monDom2|scaffold_14 (59172541-59172384) | |
| 163-288, gnl|oryCun1|scaffold_148609 (3667-3819) | |
| 163-288, gnl|panTro1|chr8 (107571430-107571581) | |
| 163-288, gnl|rheMac2|chr9 (103718968-103719119) | |
| 163-288, gnl|rn3|chr1 (253267311-253267462) | |
| 163-288, gnl|tetNig1|chr17 (6867956-6867824) | |
| 163-288, gnl|xenTro1|scaffold_233 (722617-722760) | |
| 400-562, gnl|bosTau2|chr26 (17772813-17772975) | |
| 400-562, gnl|canFam2|chr28 (19347772-19347927) | |
| 400-562, gnl|danRer3|chr13 (27820809-27820649) | |
| 400-562, gnl|dasNov1|scaffold_24116 (18041-17882) | |
| 400-562, gnl|echTel1|scaffold_320644 (51886-52045) | |
| 400-562, gnl|fr1|chrUn (8910036-8910195) | |
| 400-562, gnl|galGal2|chr6 (23188135-23188294) | |
| 400-562, gnl|hg17|chr10 (105775311-105775470) | |
| 400-562, gnl|Hg17|chr10 (105775319-105775481) | |
| 400-562, gnl|loxAfr1|scaffold_5312 (51356-51515) | |
| 400-562, gnl|mm7|chr19 (47542434-47542592) | |
| 400-562, gnl|Mm7|chr19 (47542441-47542603) | |
| 400-562, gnl|monDom2|scaffold_14 (59169882-59169723) | |
| 400-562, gnl|oryCun1|scaffold_198541 (57372-57531) | |
| 400-562, gnl|panTro1|chr8 (107576614-107576773) | |
| 400-562, gnl|rheMac2|chr9 (103724037-103724196) | |
| 400-562, gnl|rn3|chr1 (253271732-253271889) | |
| 400-562, gnl|tetNig1|chr17 (6867516-6867357) | |
| 400-562, gnl|xenTro1|scaffold_233 (726201-726360) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-162, gnl|bosTau2|chr26 (17767641-17767802) | |
| 1-162, gnl|canFam2|chr28 (19342333-19342534) | |
| 1-162, gnl|danRer3|chr13 (27825095-27824897) | |
| 1-162, gnl|dasNov1|scaffold_50137 (1132-931) | |
| 1-162, gnl|echTel1|scaffold_320644 (45689-45888) | |
| 1-162, gnl|fr1|chrUn (8909087-8909293) | |
| 1-162, gnl|galGal2|chr6 (23185241-23185441) | |
| 1-162, gnl|hg17|chr10 (105769474-105769675) | |
| 1-162, gnl|Hg17|chr10 (105769509-105769670) | |
| 1-162, gnl|mm7|chr19 (47537699-47537899) | |
| 1-162, gnl|Mm7|chr19 (47537734-47537895) | |
| 1-162, gnl|monDom2|scaffold_14 (59173649-59173448) | |
| 1-162, gnl|oryCun1|scaffold_174256 (4809-4991) | |
| 1-162, gnl|panTro1|chr8 (107570692-107570893) | |
| 1-162, gnl|rheMac2|chr9 (103718230-103718431) | |
| 1-162, gnl|rn3|chr1 (253266636-253266836) | |
| 1-162, gnl|tetNig1|chr17 (6868497-6868295) | |
| 1-162, gnl|xenTro1|scaffold_233 (722277-722462) | |
| 163-288, gnl|bosTau2|chr26 (17768353-17768478) | |
| 163-288, gnl|canFam2|chr28 (19343049-19343196) | |
| 163-288, gnl|danRer3|chr13 (27823958-27823796) | |
| 163-288, gnl|dasNov1|scaffold_50137 (481-328) | |
| 163-288, gnl|echTel1|scaffold_320644 (46333-46491) | |
| 163-288, gnl|fr1|chrUn (8909584-8909735) | |
| 163-288, gnl|galGal2|chr6 (23185788-23185931) | |
| 163-288, gnl|hg17|chr10 (105770212-105770363) | |
| 163-288, gnl|Hg17|chr10 (105770236-105770361) | |
| 163-288, gnl|loxAfr1|scaffold_5312 (45744-45898) | |
| 163-288, gnl|mm7|chr19 (47538115-47538266) | |
| 163-288, gnl|Mm7|chr19 (47538139-47538264) | |
| 163-288, gnl|monDom2|scaffold_14 (59172541-59172384) | |
| 163-288, gnl|oryCun1|scaffold_148609 (3667-3819) | |
| 163-288, gnl|panTro1|chr8 (107571430-107571581) | |
| 163-288, gnl|rheMac2|chr9 (103718968-103719119) | |
| 163-288, gnl|rn3|chr1 (253267311-253267462) | |
| 163-288, gnl|tetNig1|chr17 (6867956-6867824) | |
| 163-288, gnl|xenTro1|scaffold_233 (722617-722760) | |
| 400-562, gnl|bosTau2|chr26 (17772813-17772975) | |
| 400-562, gnl|canFam2|chr28 (19347772-19347927) | |
| 400-562, gnl|danRer3|chr13 (27820809-27820649) | |
| 400-562, gnl|dasNov1|scaffold_24116 (18041-17882) | |
| 400-562, gnl|echTel1|scaffold_320644 (51886-52045) | |
| 400-562, gnl|fr1|chrUn (8910036-8910195) | |
| 400-562, gnl|galGal2|chr6 (23188135-23188294) | |
| 400-562, gnl|hg17|chr10 (105775311-105775470) | |
| 400-562, gnl|Hg17|chr10 (105775319-105775481) | |
| 400-562, gnl|loxAfr1|scaffold_5312 (51356-51515) | |
| 400-562, gnl|mm7|chr19 (47542434-47542592) | |
| 400-562, gnl|Mm7|chr19 (47542441-47542603) | |
| 400-562, gnl|monDom2|scaffold_14 (59169882-59169723) | |
| 400-562, gnl|oryCun1|scaffold_198541 (57372-57531) | |
| 400-562, gnl|panTro1|chr8 (107576614-107576773) | |
| 400-562, gnl|rheMac2|chr9 (103724037-103724196) | |
| 400-562, gnl|rn3|chr1 (253271732-253271889) | |
| 400-562, gnl|tetNig1|chr17 (6867516-6867357) | |
| 400-562, gnl|xenTro1|scaffold_233 (726201-726360) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| eru (0.120048) | |
| cty (0.10408) |