Non-Coding RNA Search

Ss1.1-rfty530b_g8.5

Sequence:


               
               TGCGCTGGAGGAGGTGCCGGGGCCAAAGCCACCTTCTGCCCAGATGCCATCTATGGGAGG
CTTCTGCTCCTACACCTGGTCTCCAGCTAATAATATGCATTTTATTTAGGATGGACAGAT
ATTTTCTTAAACGGATGAGTTTCCCCATCCTTGGGGCTTCTTAGGAGGCCAGATAAGAAG
GGAGAGGGCCAAGATTCCTGGCGAAAACTTGTCCACTGCCTGTGACCCGCCCCTCCAGAG
TAGGTGTTCCAGGGAAGGATGTGGCTGGGGACCTTTCTGCTTGTGACTGGTGGTCAGTGG
GGCACTTTGAGCCATTGGGATATCTTAGGATGACACGCACCCAGCATCTCCAGGGCTGAG
GGGCCTTACCCACAAGCCTGCTGGGATGGACACCTGTGGAGGGCCCGGGAAGCCGTCCCC
CATGGCCCCCTTCTGTACCTCACCCCGAGACCCCTAGCACTCCCCTGGGGTCCCTATGGG
ATTGGGCTAGTGGCCAGCTACCTGCCAGGTCCTCGTCTGTGGCCATGAGGCCCGACCATC
TCCCGCTCCCCGACCCCGTAGCAAGCTCAGACCTCAGCTTTTCTGGAATGTGTGTGCATC
AGTGATATTTGTATATGTGAGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGCTGGAGGAGGTGCCGGGGCCAAAGCCACCTTCTGCCCAGATGCCATCTATGGGAGG
CTTCTGCTCCTACACCTGGTCTCCAGCTAATAATATGCATTTTATTTAGGATGGACAGAT
ATTTTCTTAAACGGATGAGTTTCCCCATCCTTGGGGCTTCTTAGGAGGCCAGATAAGAAG
GGAGAGGGCCAAGATTCCTGGCGAAAACTTGTCCACTGCCTGTGACCCGCCCCTCCAGAG
TAGGTGTTCCAGGGAAGGATGTGGCTGGGGACCTTTCTGCTTGTGACTGGTGGTCAGTGG
GGCACTTTGAGCCATTGGGATATCTTAGGATGACACGCACCCAGCATCTCCAGGGCTGAG
GGGCCTTACCCACAAGCCTGCTGGGATGGACACCTGTGGAGGGCCCGGGAAGCCGTCCCC
CATGGCCCCCTTCTGTACCTCACCCCGAGACCCCTAGCACTCCCCTGGGGTCCCTATGGG
ATTGGGCTAGTGGCCAGCTACCTGCCAGGTCCTCGTCTGTGGCCATGAGGCCCGACCATC
TCCCGCTCCCCGACCCCGTAGCAAGCTCAGACCTCAGCTTTTCTGGAATGTGTGTGCATC
AGTGATATTTGTATATGTGAGGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               210-322, - strand, RNAz p=0.771363

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               210-322, - strand, RNAz p=0.771363

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               241-341, + strand, RNAmicro p=0.989194

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               241-341, + strand, RNAmicro p=0.989194

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-624, gnl|bosTau2|chr8 (57545869-57545234)
               

               
               2-624, gnl|canFam2|chr11 (71592012-71592703)
               

               
               2-624, gnl|dasNov1|scaffold_8909 (9064-8456)
               

               
               2-624, gnl|echTel1|scaffold_122874 (13-664)
               

               
               2-624, gnl|hg17|chr9 (114178150-114178822)
               

               
               2-624, gnl|Hg17|chr9 (114178680-114178051)
               

               
               2-624, gnl|loxAfr1|scaffold_30090 (6705-6006)
               

               
               2-624, gnl|mm7|chr4 (62801040-62801680)
               

               
               2-624, gnl|Mm7|chr4 (62801523-62800905)
               

               
               2-624, gnl|monDom2|scaffold_38 (4194303-4195018)
               

               
               2-624, gnl|oryCun1|scaffold_214303 (219063-219662)
               

               
               2-624, gnl|panTro1|chr11 (98711988-98712665)
               

               
               2-624, gnl|rheMac2|chr15 (21791153-21790460)
               

               
               2-624, gnl|rn3|chr5 (80334757-80335411)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-624, gnl|bosTau2|chr8 (57545869-57545234)
               

               
               2-624, gnl|canFam2|chr11 (71592012-71592703)
               

               
               2-624, gnl|dasNov1|scaffold_8909 (9064-8456)
               

               
               2-624, gnl|echTel1|scaffold_122874 (13-664)
               

               
               2-624, gnl|hg17|chr9 (114178150-114178822)
               

               
               2-624, gnl|Hg17|chr9 (114178680-114178051)
               

               
               2-624, gnl|loxAfr1|scaffold_30090 (6705-6006)
               

               
               2-624, gnl|mm7|chr4 (62801040-62801680)
               

               
               2-624, gnl|Mm7|chr4 (62801523-62800905)
               

               
               2-624, gnl|monDom2|scaffold_38 (4194303-4195018)
               

               
               2-624, gnl|oryCun1|scaffold_214303 (219063-219662)
               

               
               2-624, gnl|panTro1|chr11 (98711988-98712665)
               

               
               2-624, gnl|rheMac2|chr15 (21791153-21790460)
               

               
               2-624, gnl|rn3|chr5 (80334757-80335411)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               fty (0.351679)
               

               
               pty (0.142714)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               pty (0.142714)
               

               
               jej (0.0989218)

	2-624, gnl\|bosTau2\|chr8 (57545869-57545234)
	2-624, gnl\|canFam2\|chr11 (71592012-71592703)
	2-624, gnl\|dasNov1\|scaffold_8909 (9064-8456)
	2-624, gnl\|echTel1\|scaffold_122874 (13-664)
	2-624, gnl\|hg17\|chr9 (114178150-114178822)
	2-624, gnl\|Hg17\|chr9 (114178680-114178051)
	2-624, gnl\|loxAfr1\|scaffold_30090 (6705-6006)
	2-624, gnl\|mm7\|chr4 (62801040-62801680)
	2-624, gnl\|Mm7\|chr4 (62801523-62800905)
	2-624, gnl\|monDom2\|scaffold_38 (4194303-4195018)
	2-624, gnl\|oryCun1\|scaffold_214303 (219063-219662)
	2-624, gnl\|panTro1\|chr11 (98711988-98712665)
	2-624, gnl\|rheMac2\|chr15 (21791153-21790460)
	2-624, gnl\|rn3\|chr5 (80334757-80335411)