Non-Coding RNA Search

Ss1.1-rfty537b_e23.5

Sequence:


               
               TGGTCACTCTGTTTGTTGGGTCCTGGCTGGAGGCCGTGGTGGAGTGGGCCCCCTGGGCCC
GGGACAGGCTGGCCTGAGGCAGAAGGGGCAGGTGAGGATTCTGGTCCAGGGTCCTCAGAC
CCCTGTCCCACTAGCTGGACCCTCCTCCCTCCTGACTGTCTACCAGAGCTGAAACCCCAA
GGTTTCACCAGAGGCCACCGTGAAGCCTCGCCCCCTCCGAATCATAGCATCCCAGCGTCT
TAGAGACAGCCTCCGGCATCCGTCCCCCTAGCCTCGCACAATCGCCCCCCGAGGCCGAGA
AGACGTTACATTTCTGTAAATAGAGCCAGCAAGTATATACTGTGATTTATTTTTACTGTA
TTCCTGAGGATGGACTGGAATGTTTCTTTTTCTCTCACCCCTTCATGGGGGGGAGGGGGT
CTTTTATTTTGGCGGGGGGGGGTGGGGTGGGGTAGACTTTTTAGAGTAGAAGCCGCACTT
CGCAATAAGCTCCTTTGTCTGTCAGCCCCTCTCCCCCCCTACTCTATGACGAACGATGTT
TGTTTGTAATAAAAAGGAAGACAAGACAAAACAAAACGGGGGGGAACATCACCACCAAAA
AAAAGAGACCCCTCCCCAAGACACTTTAATGAAGTGAACAGCGCATTTATACAGATTTCA
TATTTCTACCCGCCTTTCCTGATCTGTGTTTTATATATATTATATATAAATATATATGGT
GCGCGGCCGCAGGGAGCCGGCTCAGGCACGCCGGTGGGGGGCTTTTGTAGGGTCGTGGGC
GGGCAGCGTTGCCACGCCTGGAGCTGGCGACGGGGCCTCCCCCCTCCGTCACAATCAACT
TTGGATTCTGTATTTTTTTATAATAAAATGAGTGTAAACATCAAAAAAAAAAAAAAAAAA
CTCGAGACTAGTTCCCTCGTGCCGAATTCGGCACGAGGCTCGGACCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTCACTCTGTTTGTTGGGTCCTGGCTGGAGGCCGTGGTGGAGTGGGCCCCCTGGGCCC
GGGACAGGCTGGCCTGAGGCAGAAGGGGCAGGTGAGGATTCTGGTCCAGGGTCCTCAGAC
CCCTGTCCCACTAGCTGGACCCTCCTCCCTCCTGACTGTCTACCAGAGCTGAAACCCCAA
GGTTTCACCAGAGGCCACCGTGAAGCCTCGCCCCCTCCGAATCATAGCATCCCAGCGTCT
TAGAGACAGCCTCCGGCATCCGTCCCCCTAGCCTCGCACAATCGCCCCCCGAGGCCGAGA
AGACGTTACATTTCTGTAAATAGAGCCAGCAAGTATATACTGTGATTTATTTTTACTGTA
TTCCTGAGGATGGACTGGAATGTTTCTTTTTCTCTCACCCCTTCATGGGGGGGAGGGGGT
CTTTTATTTTGGCGGGGGGGGGTGGGGTGGGGTAGACTTTTTAGAGTAGAAGCCGCACTT
CGCAATAAGCTCCTTTGTCTGTCAGCCCCTCTCCCCCCCTACTCTATGACGAACGATGTT
TGTTTGTAATAAAAAGGAAGACAAGACAAAACAAAACGGGGGGGAACATCACCACCAAAA
AAAAGAGACCCCTCCCCAAGACACTTTAATGAAGTGAACAGCGCATTTATACAGATTTCA
TATTTCTACCCGCCTTTCCTGATCTGTGTTTTATATATATTATATATAAATATATATGGT
GCGCGGCCGCAGGGAGCCGGCTCAGGCACGCCGGTGGGGGGCTTTTGTAGGGTCGTGGGC
GGGCAGCGTTGCCACGCCTGGAGCTGGCGACGGGGCCTCCCCCCTCCGTCACAATCAACT
TTGGATTCTGTATTTTTTTATAATAAAATGAGTGTAAACATCAAAAAAAAAAAAAAAAAA
CTCGAGACTAGTTCCCTCGTGCCGAATTCGGCACGAGGCTCGGACCGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               670-771, - strand, RNAz p=0.691048

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               670-771, - strand, RNAz p=0.691048

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-882, gnl|bosTau2|chr7 (29154551-29153647)
               

               
               1-882, gnl|Hg17|chr19 (1251551-1252427)
               

               
               1-882, gnl|Mm7|chr10 (79971469-79972303)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-882, gnl|bosTau2|chr7 (29154551-29153647)
               

               
               1-882, gnl|Hg17|chr19 (1251551-1252427)
               

               
               1-882, gnl|Mm7|chr10 (79971469-79972303)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	1-882, gnl\|bosTau2\|chr7 (29154551-29153647)
	1-882, gnl\|Hg17\|chr19 (1251551-1252427)
	1-882, gnl\|Mm7\|chr10 (79971469-79972303)