Ss1.1-rfty538b_n4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGATGGTGGAGTCTGTGTTCCGGAACTTTGACGTCGATGGGGACGGCCACATCTCGCA GGAGGAGTTCCAGATCATCCGTGGGAACTTTCCTTACCTCAGCGCCTTGGGGGACCTCGA CCAGAACCAGGATGGCTGCATCAGCAGGGAGGAGATGGTTTCCTACTTCCTGCGGTCCAG CTCCGTGCTGGGGGGCCGCATGGGCTTCGTACACAACTTCCACGAGAGCAACTCCTTGCG CCCGGTCGCCTGCCGCCACTGCAAGGCCCTGATCCTGGGCATCTACAAGCAGGGCCTCAA ATGCCGAGCCTGTGGTGTGAACTGCCACAAGCAGTGCAAAGATCGCCTGTCAGTCGAGTG TCGGCGCCGGGCGCAGAGTGTGAGTCTGGAGGGGTCTGCACACTCACCCTCACCCACCCA CACCCACCATCGGGCCTTCAGCTTCTCCCTGCCCCGCCCAGGCAGGCGAGGCTCCCGGCC TCCAGAGATCCGAGAGGAGGAGGTTCAGACGGTGGAGGATGGCGTCTTCGACATCCACTT GTAATTGATGCTGTGATTGGATCGAGCACTCATGCCTGCTTTGGAGAAAAGACTTGGACC AGAGCAGGGAGCCGGGGGTGCTGGGGCAGCAGGCTGGGGCTGGGGGGCGGGGTGTGAGGG TGGCATGCGGCTGAGGGCAGGGCCAGGGCTGGTGTCCTTAAGGTTGTACAGACTCTTGTG AATATTTGTATTTTCCAGATGGAATAAAAAGGCCCGTGTAATTAACCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGATGGTGGAGTCTGTGTTCCGGAACTTTGACGTCGATGGGGACGGCCACATCTCGCA GGAGGAGTTCCAGATCATCCGTGGGAACTTTCCTTACCTCAGCGCCTTGGGGGACCTCGA CCAGAACCAGGATGGCTGCATCAGCAGGGAGGAGATGGTTTCCTACTTCCTGCGGTCCAG CTCCGTGCTGGGGGGCCGCATGGGCTTCGTACACAACTTCCACGAGAGCAACTCCTTGCG CCCGGTCGCCTGCCGCCACTGCAAGGCCCTGATCCTGGGCATCTACAAGCAGGGCCTCAA ATGCCGAGCCTGTGGTGTGAACTGCCACAAGCAGTGCAAAGATCGCCTGTCAGTCGAGTG TCGGCGCCGGGCGCAGAGTGTGAGTCTGGAGGGGTCTGCACACTCACCCTCACCCACCCA CACCCACCATCGGGCCTTCAGCTTCTCCCTGCCCCGCCCAGGCAGGCGAGGCTCCCGGCC TCCAGAGATCCGAGAGGAGGAGGTTCAGACGGTGGAGGATGGCGTCTTCGACATCCACTT GTAATTGATGCTGTGATTGGATCGAGCACTCATGCCTGCTTTGGAGAAAAGACTTGGACC AGAGCAGGGAGCCGGGGGTGCTGGGGCAGCAGGCTGGGGCTGGGGGGCGGGGTGTGAGGG TGGCATGCGGCTGAGGGCAGGGCCAGGGCTGGTGTCCTTAAGGTTGTACAGACTCTTGTG AATATTTGTATTTTCCAGATGGAATAAAAAGGCCCGTGTAATTAACCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 550-768, + strand, RNAz p=0.628614 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 550-768, + strand, RNAz p=0.628614 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK092882, + |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 121-271, gnl|bosTau2|chr29 (33883297-33883147) | |
| 121-271, gnl|canFam2|chr18 (55449366-55449217) | |
| 121-271, gnl|canFam2|chr18 (55449220-55449360) | |
| 121-271, gnl|danRer3|chr17 (16583407-16583564) | |
| 121-271, gnl|dasNov1|scaffold_49641 (3187-3322) | |
| 121-271, gnl|dasNov1|scaffold_49641 (3319-3187) | |
| 121-271, gnl|echTel1|scaffold_170395 (2152-2301) | |
| 121-271, gnl|echTel1|scaffold_170395 (2298-2156) | |
| 121-271, gnl|fr1|chrUn (231138041-231137892) | |
| 121-271, gnl|hg17|chr11 (64254095-64254246) | |
| 121-271, gnl|Hg17|chr11 (64254247-64254101) | |
| 121-271, gnl|hg17|chr4 (69309089-69309231) | |
| 121-271, gnl|loxAfr1|scaffold_209294 (810-661) | |
| 121-271, gnl|loxAfr1|scaffold_209294 (664-807) | |
| 121-271, gnl|mm7|chr19 (6307938-6307787) | |
| 121-271, gnl|mm7|chr19 (6307790-6307933) | |
| 121-271, gnl|Mm7|chr19 (6307784-6307930) | |
| 121-271, gnl|monDom2|scaffold_139 (514755-514909) | |
| 121-271, gnl|oryCun1|scaffold_120571 (4007-4161) | |
| 121-271, gnl|panTro1|chr9 (65471237-65471388) | |
| 121-271, gnl|panTro1|chr9 (65471381-65471245) | |
| 121-271, gnl|rheMac2|chr14 (9727942-9727791) | |
| 121-271, gnl|rheMac2|chr14 (9727798-9727934) | |
| 121-271, gnl|rn3|chr1 (209355662-209355513) | |
| 121-271, gnl|rn3|chr1 (209355514-209355657) | |
| 121-271, gnl|tetNig1|chrUn_random (23468592-23468443) | |
| 121-271, gnl|xenTro1|scaffold_145 (674956-674810) | |
| 304-485, gnl|bosTau2|chr29 (33882320-33882139) | |
| 304-485, gnl|Hg17|chr11 (64253095-64252911) | |
| 304-485, gnl|Mm7|chr19 (6308564-6308745) | |
| 550-768, gnl|bosTau2|chr29 (33881025-33880807) | |
| 550-768, gnl|canFam2|chr18 (55451757-55451248) | |
| 550-768, gnl|canFam2|chr18 (55451428-55451646) | |
| 550-768, gnl|dasNov1|scaffold_49641 (979-1410) | |
| 550-768, gnl|dasNov1|scaffold_49641 (1252-1070) | |
| 550-768, gnl|echTel1|scaffold_170395 (99-540) | |
| 550-768, gnl|echTel1|scaffold_170395 (414-202) | |
| 550-768, gnl|hg17|chr11 (64250867-64251350) | |
| 550-768, gnl|Hg17|chr11 (64251180-64250962) | |
| 550-768, gnl|hg17|chr4 (69309510-69309731) | |
| 550-768, gnl|loxAfr1|scaffold_188080 (110-557) | |
| 550-768, gnl|loxAfr1|scaffold_188080 (395-189) | |
| 550-768, gnl|mm7|chr19 (6309987-6309556) | |
| 550-768, gnl|mm7|chr19 (6309698-6309915) | |
| 550-768, gnl|Mm7|chr19 (6309697-6309914) | |
| 550-768, gnl|oryCun1|scaffold_201432 (39624-39184) | |
| 550-768, gnl|oryCun1|scaffold_201432 (39325-39541) | |
| 550-768, gnl|panTro1|chr9 (65467969-65468452) | |
| 550-768, gnl|panTro1|chr9 (65468283-65468062) | |
| 550-768, gnl|rheMac2|chr14 (9730834-9730353) | |
| 550-768, gnl|rheMac2|chr14 (9730520-9730741) | |
| 550-768, gnl|rn3|chr1 (209357660-209357232) | |
| 550-768, gnl|rn3|chr1 (209357369-209357589) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 121-271, gnl|bosTau2|chr29 (33883297-33883147) | |
| 121-271, gnl|canFam2|chr18 (55449366-55449217) | |
| 121-271, gnl|canFam2|chr18 (55449220-55449360) | |
| 121-271, gnl|danRer3|chr17 (16583407-16583564) | |
| 121-271, gnl|dasNov1|scaffold_49641 (3187-3322) | |
| 121-271, gnl|dasNov1|scaffold_49641 (3319-3187) | |
| 121-271, gnl|echTel1|scaffold_170395 (2152-2301) | |
| 121-271, gnl|echTel1|scaffold_170395 (2298-2156) | |
| 121-271, gnl|fr1|chrUn (231138041-231137892) | |
| 121-271, gnl|hg17|chr11 (64254095-64254246) | |
| 121-271, gnl|Hg17|chr11 (64254247-64254101) | |
| 121-271, gnl|hg17|chr4 (69309089-69309231) | |
| 121-271, gnl|loxAfr1|scaffold_209294 (810-661) | |
| 121-271, gnl|loxAfr1|scaffold_209294 (664-807) | |
| 121-271, gnl|mm7|chr19 (6307938-6307787) | |
| 121-271, gnl|mm7|chr19 (6307790-6307933) | |
| 121-271, gnl|Mm7|chr19 (6307784-6307930) | |
| 121-271, gnl|monDom2|scaffold_139 (514755-514909) | |
| 121-271, gnl|oryCun1|scaffold_120571 (4007-4161) | |
| 121-271, gnl|panTro1|chr9 (65471237-65471388) | |
| 121-271, gnl|panTro1|chr9 (65471381-65471245) | |
| 121-271, gnl|rheMac2|chr14 (9727942-9727791) | |
| 121-271, gnl|rheMac2|chr14 (9727798-9727934) | |
| 121-271, gnl|rn3|chr1 (209355662-209355513) | |
| 121-271, gnl|rn3|chr1 (209355514-209355657) | |
| 121-271, gnl|tetNig1|chrUn_random (23468592-23468443) | |
| 121-271, gnl|xenTro1|scaffold_145 (674956-674810) | |
| 304-485, gnl|bosTau2|chr29 (33882320-33882139) | |
| 304-485, gnl|Hg17|chr11 (64253095-64252911) | |
| 304-485, gnl|Mm7|chr19 (6308564-6308745) | |
| 550-768, gnl|bosTau2|chr29 (33881025-33880807) | |
| 550-768, gnl|canFam2|chr18 (55451757-55451248) | |
| 550-768, gnl|canFam2|chr18 (55451428-55451646) | |
| 550-768, gnl|dasNov1|scaffold_49641 (979-1410) | |
| 550-768, gnl|dasNov1|scaffold_49641 (1252-1070) | |
| 550-768, gnl|echTel1|scaffold_170395 (99-540) | |
| 550-768, gnl|echTel1|scaffold_170395 (414-202) | |
| 550-768, gnl|hg17|chr11 (64250867-64251350) | |
| 550-768, gnl|Hg17|chr11 (64251180-64250962) | |
| 550-768, gnl|hg17|chr4 (69309510-69309731) | |
| 550-768, gnl|loxAfr1|scaffold_188080 (110-557) | |
| 550-768, gnl|loxAfr1|scaffold_188080 (395-189) | |
| 550-768, gnl|mm7|chr19 (6309987-6309556) | |
| 550-768, gnl|mm7|chr19 (6309698-6309915) | |
| 550-768, gnl|Mm7|chr19 (6309697-6309914) | |
| 550-768, gnl|oryCun1|scaffold_201432 (39624-39184) | |
| 550-768, gnl|oryCun1|scaffold_201432 (39325-39541) | |
| 550-768, gnl|panTro1|chr9 (65467969-65468452) | |
| 550-768, gnl|panTro1|chr9 (65468283-65468062) | |
| 550-768, gnl|rheMac2|chr14 (9730834-9730353) | |
| 550-768, gnl|rheMac2|chr14 (9730520-9730741) | |
| 550-768, gnl|rn3|chr1 (209357660-209357232) | |
| 550-768, gnl|rn3|chr1 (209357369-209357589) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| fty (0.351679) | |
| fcc (0.197785) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.351679) | |
| fcc (0.197785) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) |