Non-Coding RNA Search

Ss1.1-rfty538b_o13.5

Sequence:


               
               TGCAGGAATCGGCACGGGCCGGCACACCCCGCTGCCCGCCGCCGCCGCCGCCGCCGTGGA
GGAGATGACCGCTCTCAGCTCAGGGAGAGACCCCACCCTTGGTCCCTTCTCTCACCCAGA
GTAAGGCTCTTCTTCTGAGGGACTGGGGCTTCCAGGCCGCTGTGTCCCGGCCCCCAGCTC
CTGCTTCAGACTGAGCCACCTTGTGGTGCTGGGCTTCTGCCCACCGGCCGTGCCATCTCA
CCCACCCTGGCGGCTCCCCCTGCCCTGGAGCCCCCGCTGGTGCAGTCTAGGAGCGAGGGG
TCAAGTTGCCTTCTGTCTGTGTCTGCCCCGGTCCTCCCAGATGTCTGGATGGTGCTGCCC
TCCCCTGCCCCGTGTCTTTGGGGTCCATTTGTCTTTTTTTTTTTTTTTTTTTTTAATTAA
AGCTCCTGGCCCGGTCCCACCCCACTATCCCCGCACTGCGGTTAATTTATCTGTCGTTTA
AAATGCGGCTGCTCTGCTTCCAGCCTCTGCTTCTGCCTATCCCTAATAAAATGTGGAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGAATCGGCACGGGCCGGCACACCCCGCTGCCCGCCGCCGCCGCCGCCGCCGTGGA
GGAGATGACCGCTCTCAGCTCAGGGAGAGACCCCACCCTTGGTCCCTTCTCTCACCCAGA
GTAAGGCTCTTCTTCTGAGGGACTGGGGCTTCCAGGCCGCTGTGTCCCGGCCCCCAGCTC
CTGCTTCAGACTGAGCCACCTTGTGGTGCTGGGCTTCTGCCCACCGGCCGTGCCATCTCA
CCCACCCTGGCGGCTCCCCCTGCCCTGGAGCCCCCGCTGGTGCAGTCTAGGAGCGAGGGG
TCAAGTTGCCTTCTGTCTGTGTCTGCCCCGGTCCTCCCAGATGTCTGGATGGTGCTGCCC
TCCCCTGCCCCGTGTCTTTGGGGTCCATTTGTCTTTTTTTTTTTTTTTTTTTTTAATTAA
AGCTCCTGGCCCGGTCCCACCCCACTATCCCCGCACTGCGGTTAATTTATCTGTCGTTTA
AAATGCGGCTGCTCTGCTTCCAGCCTCTGCTTCTGCCTATCCCTAATAAAATGTGGAGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               100-272, - strand, RNAz p=0.922546

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-272, - strand, RNAz p=0.922546

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               119-216, - strand, RNAmicro p=0.939312

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               119-216, - strand, RNAmicro p=0.939312

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               21-417, gnl|bosTau2|chr5 (21611642-21612037)
               

               
               21-417, gnl|Hg17|chr12 (48471745-48471343)
               

               
               21-417, gnl|Mm7|chr15 (99407799-99407414)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-417, gnl|bosTau2|chr5 (21611642-21612037)
               

               
               21-417, gnl|Hg17|chr12 (48471745-48471343)
               

               
               21-417, gnl|Mm7|chr15 (99407799-99407414)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               fty (0.17584)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fty (0.17584)

	21-417, gnl\|bosTau2\|chr5 (21611642-21612037)
	21-417, gnl\|Hg17\|chr12 (48471745-48471343)
	21-417, gnl\|Mm7\|chr15 (99407799-99407414)