Non-Coding RNA Search

Ss1.1-rgul0101_k23.5

Sequence:


               
               GAAGGGGGTGTGTGTGTGTGTGTGCGCGCGCGCGTGTGTGTGGTGTGTGTGTGTGTGTGT
GTGTCGAGGAAGGAAAAAAGGTGGATCAGTGATTTTACTTGAAAACAAGCTCCATCCCTT
TTCTATATTTATAAGAAGAGAAGATCCTGAGCGAAGCAGCACGCGACCCAGGTGTGTGTG
AATTGAATGGAGACGTTTCTTTTCCTCTTTTTTAAATTTTTTGTTTTTTGTTCTTTTTCT
TTCTCTTAAAAAAGAAGTTTTATTTTGTTGTTTCTTTTACTTTTTTGGTAACAAAAACTA
AAATAAGGAATAGAAAAGCTGTTTTTCAGGCTGACAGTCCAATTAAGGGTAGTCGAGACC
TTGCATGGTAGACTAGGAATCATAGTGTCAGTGAGGTCCAGTGAGTCTGTGTGAGTCCTT
GTGTCATCGTTCGGGGCACTGTTTTTTTATGCAAGGGCAAAAATCTTTGTATCTGGGGAA
AACAACAACAACAACTTTTTTTTTTAATTAAAAAGGAAAATAAAAAGATATTGAGGTCTT
CCTAGTGTTACTTAAATTAAGATCAAGGTAAGAAACATTGTAAAAAAGAAATTACAAAAG
TGCTATTTGTTTCCTAAAAACAGTGATTTCTATTAAAAAGGTGTCAGAACTGGAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGGGGTGTGTGTGTGTGTGTGCGCGCGCGCGTGTGTGTGGTGTGTGTGTGTGTGTGT
GTGTCGAGGAAGGAAAAAAGGTGGATCAGTGATTTTACTTGAAAACAAGCTCCATCCCTT
TTCTATATTTATAAGAAGAGAAGATCCTGAGCGAAGCAGCACGCGACCCAGGTGTGTGTG
AATTGAATGGAGACGTTTCTTTTCCTCTTTTTTAAATTTTTTGTTTTTTGTTCTTTTTCT
TTCTCTTAAAAAAGAAGTTTTATTTTGTTGTTTCTTTTACTTTTTTGGTAACAAAAACTA
AAATAAGGAATAGAAAAGCTGTTTTTCAGGCTGACAGTCCAATTAAGGGTAGTCGAGACC
TTGCATGGTAGACTAGGAATCATAGTGTCAGTGAGGTCCAGTGAGTCTGTGTGAGTCCTT
GTGTCATCGTTCGGGGCACTGTTTTTTTATGCAAGGGCAAAAATCTTTGTATCTGGGGAA
AACAACAACAACAACTTTTTTTTTTAATTAAAAAGGAAAATAAAAAGATATTGAGGTCTT
CCTAGTGTTACTTAAATTAAGATCAAGGTAAGAAACATTGTAAAAAAGAAATTACAAAAG
TGCTATTTGTTTCCTAAAAACAGTGATTTCTATTAAAAAGGTGTCAGAACTGGAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               130-243, + strand, RNAz p=0.577303

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               130-243, + strand, RNAz p=0.577303

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB051483, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB051483, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               51-659, gnl|bosTau2|chr15 (47749396-47748775)
               

               
               51-659, gnl|Hg17|chr11 (45911272-45910687)
               

               
               51-659, gnl|Mm7|chr2 (92211884-92212551)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-659, gnl|bosTau2|chr15 (47749396-47748775)
               

               
               51-659, gnl|Hg17|chr11 (45911272-45910687)
               

               
               51-659, gnl|Mm7|chr2 (92211884-92212551)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               gul (0.177588)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               thg (0.126791)

	51-659, gnl\|bosTau2\|chr15 (47749396-47748775)
	51-659, gnl\|Hg17\|chr11 (45911272-45910687)
	51-659, gnl\|Mm7\|chr2 (92211884-92212551)