Non-Coding RNA Search

Ss1.1-rgul0102_n22.5

Sequence:


               
               TGATATTCCCATGTTTTCTCAATTCTGGGAAGCCTAGTACAATGGTACTAATGTAATCAC
TGAAGCCTTTTCTTAAAATAAGGGAAGGGGCCAACCTTGGACTAAAGTTACAAGTTCAGG
GGACTTGGGGGTTTGCTATAAACCCTAACAATGGATTTTGGTTCATCATGTAAATGAAAC
TTTGATTTTTTTTTTTTTTTTTTTTTAAAGGACTGACTGGCCTTTCATGTTCTGTATCCT
TCATGCTCACCATCTCAGCAGGCCTGAGAGGCAGGGTCAGTTTGGGTGTGAATCATGAGT
ATTGCTTCTGCCAGGGAACAAGGAACATGGGCATGTTGCTGAGATCGCGGGATGGAAGTG
AGCACTGAAGGGAGGGTGAGAGCCTGGCTCTTGCTCTGGAGGGGAGTTACTCTAGAAGTG
GAACACTGGGGTCGTTTCTCTAGCATGTTCCCTTAGGAAGTCTAGGTTTGCGGTTAATCT
GGCTGAGAATCTTAAGTTCTGTGCCTTAGAGACAATTTGCACTTTCTCAAATTGTGCCTG
GGACAACCATATGAATTTTTCCCACCAAAAAGCTATGCAAACAGAAACCAGTTCAAAGGT
GGCAGCCATGCATCAGATTAAAAGTGAAAAGTGAGGCAGCAGAAATGTCTTTGAATGGTG
TTCTGAGCTAACTCTCAATTGTGTCGTAATTTTCTTCTTTATGTAGTGCTAGGTGTTTGA
AGTTTTCCCGTAGTATTGCTTTTGAGTTATAGTATAACCTGACGCTCCTCTACTCTGGCA
TTGTTGCTAAAGAATTAGCTTATTGTTAGCCACATGTTTGAAAGGTTGAGGGTGGAGTGG
TTTGGCATTTCTGTTTTAAATAAACATTTAAACTCTCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATATTCCCATGTTTTCTCAATTCTGGGAAGCCTAGTACAATGGTACTAATGTAATCAC
TGAAGCCTTTTCTTAAAATAAGGGAAGGGGCCAACCTTGGACTAAAGTTACAAGTTCAGG
GGACTTGGGGGTTTGCTATAAACCCTAACAATGGATTTTGGTTCATCATGTAAATGAAAC
TTTGATTTTTTTTTTTTTTTTTTTTTAAAGGACTGACTGGCCTTTCATGTTCTGTATCCT
TCATGCTCACCATCTCAGCAGGCCTGAGAGGCAGGGTCAGTTTGGGTGTGAATCATGAGT
ATTGCTTCTGCCAGGGAACAAGGAACATGGGCATGTTGCTGAGATCGCGGGATGGAAGTG
AGCACTGAAGGGAGGGTGAGAGCCTGGCTCTTGCTCTGGAGGGGAGTTACTCTAGAAGTG
GAACACTGGGGTCGTTTCTCTAGCATGTTCCCTTAGGAAGTCTAGGTTTGCGGTTAATCT
GGCTGAGAATCTTAAGTTCTGTGCCTTAGAGACAATTTGCACTTTCTCAAATTGTGCCTG
GGACAACCATATGAATTTTTCCCACCAAAAAGCTATGCAAACAGAAACCAGTTCAAAGGT
GGCAGCCATGCATCAGATTAAAAGTGAAAAGTGAGGCAGCAGAAATGTCTTTGAATGGTG
TTCTGAGCTAACTCTCAATTGTGTCGTAATTTTCTTCTTTATGTAGTGCTAGGTGTTTGA
AGTTTTCCCGTAGTATTGCTTTTGAGTTATAGTATAACCTGACGCTCCTCTACTCTGGCA
TTGTTGCTAAAGAATTAGCTTATTGTTAGCCACATGTTTGAAAGGTTGAGGGTGGAGTGG
TTTGGCATTTCTGTTTTAAATAAACATTTAAACTCTCAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-113, + strand, RNAz p=0.855451

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-113, + strand, RNAz p=0.855451

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-879, gnl|bosTau2|chr10 (56693198-56692324)
               

               
               1-879, gnl|canFam2|chr8 (51218912-51219639)
               

               
               1-879, gnl|dasNov1|scaffold_2022 (98031-98758)
               

               
               1-879, gnl|echTel1|scaffold_317142 (76261-76982)
               

               
               1-879, gnl|galGal2|chr5 (35011420-35012177)
               

               
               1-879, gnl|hg17|chr14 (74618449-74619175)
               

               
               1-879, gnl|Hg17|chr14 (74619437-74618577)
               

               
               1-879, gnl|loxAfr1|scaffold_14871 (48468-47742)
               

               
               1-879, gnl|mm7|chr12 (83299213-83299932)
               

               
               1-879, gnl|Mm7|chr12 (83300183-83299351)
               

               
               1-879, gnl|monDom2|scaffold_8 (59404006-59403265)
               

               
               1-879, gnl|oryCun1|scaffold_181133 (43795-44503)
               

               
               1-879, gnl|panTro1|chr15 (74646324-74647051)
               

               
               1-879, gnl|rheMac2|chr7 (138194086-138194808)
               

               
               1-879, gnl|rn3|chr6 (109349190-109349901)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-879, gnl|bosTau2|chr10 (56693198-56692324)
               

               
               1-879, gnl|canFam2|chr8 (51218912-51219639)
               

               
               1-879, gnl|dasNov1|scaffold_2022 (98031-98758)
               

               
               1-879, gnl|echTel1|scaffold_317142 (76261-76982)
               

               
               1-879, gnl|galGal2|chr5 (35011420-35012177)
               

               
               1-879, gnl|hg17|chr14 (74618449-74619175)
               

               
               1-879, gnl|Hg17|chr14 (74619437-74618577)
               

               
               1-879, gnl|loxAfr1|scaffold_14871 (48468-47742)
               

               
               1-879, gnl|mm7|chr12 (83299213-83299932)
               

               
               1-879, gnl|Mm7|chr12 (83300183-83299351)
               

               
               1-879, gnl|monDom2|scaffold_8 (59404006-59403265)
               

               
               1-879, gnl|oryCun1|scaffold_181133 (43795-44503)
               

               
               1-879, gnl|panTro1|chr15 (74646324-74647051)
               

               
               1-879, gnl|rheMac2|chr7 (138194086-138194808)
               

               
               1-879, gnl|rn3|chr6 (109349190-109349901)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               isp (0.300752)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.300752)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1-879, gnl\|bosTau2\|chr10 (56693198-56692324)
	1-879, gnl\|canFam2\|chr8 (51218912-51219639)
	1-879, gnl\|dasNov1\|scaffold_2022 (98031-98758)
	1-879, gnl\|echTel1\|scaffold_317142 (76261-76982)
	1-879, gnl\|galGal2\|chr5 (35011420-35012177)
	1-879, gnl\|hg17\|chr14 (74618449-74619175)
	1-879, gnl\|Hg17\|chr14 (74619437-74618577)
	1-879, gnl\|loxAfr1\|scaffold_14871 (48468-47742)
	1-879, gnl\|mm7\|chr12 (83299213-83299932)
	1-879, gnl\|Mm7\|chr12 (83300183-83299351)
	1-879, gnl\|monDom2\|scaffold_8 (59404006-59403265)
	1-879, gnl\|oryCun1\|scaffold_181133 (43795-44503)
	1-879, gnl\|panTro1\|chr15 (74646324-74647051)
	1-879, gnl\|rheMac2\|chr7 (138194086-138194808)
	1-879, gnl\|rn3\|chr6 (109349190-109349901)

	isp (0.300752)
	mas (0.210305)
	gul (0.177588)
	eye (0.170503)
	fat (0.147427)
	nmm (0.132802)
	cov (0.132153)
	sug (0.127291)
	thg (0.126791)
	cty (0.10408)
	ldo (0.0970026)